Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25410 and ABID97_RS25415 are separated by 2 nucleotides ABID97_RS25415 and ABID97_RS25420 overlap by 4 nucleotides ABID97_RS25420 and ABID97_RS25425 overlap by 4 nucleotides
ABID97_RS25410: ABID97_RS25410 - aldehyde dehydrogenase family protein, at 1 to 1,017
_RS25410
ABID97_RS25415: ABID97_RS25415 - GMC family oxidoreductase N-terminal domain-containing protein, at 1,020 to 2,630
_RS25415
ABID97_RS25420: ABID97_RS25420 - ATP-binding cassette domain-containing protein, at 2,627 to 3,310
_RS25420
ABID97_RS25425: ABID97_RS25425 - ATP-binding cassette domain-containing protein, at 3,307 to 4,092
_RS25425
Position (kb) 1
2
3 Strain fitness (log2 ratio) -1
0
1 at 0.086 kb on + strand at 0.087 kb on - strand at 1.721 kb on - strand, within ABID97_RS25415 at 1.721 kb on - strand, within ABID97_RS25415 at 1.721 kb on - strand, within ABID97_RS25415 at 1.748 kb on - strand, within ABID97_RS25415 at 1.748 kb on - strand, within ABID97_RS25415 at 2.341 kb on + strand, within ABID97_RS25415 at 2.342 kb on - strand, within ABID97_RS25415 at 2.606 kb on - strand at 2.606 kb on - strand at 3.073 kb on - strand, within ABID97_RS25420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 86 + -0.1 87 - -0.6 1,721 - ABID97_RS25415 0.44 +1.5 1,721 - ABID97_RS25415 0.44 -0.0 1,721 - ABID97_RS25415 0.44 -0.5 1,748 - ABID97_RS25415 0.45 +0.2 1,748 - ABID97_RS25415 0.45 +0.0 2,341 + ABID97_RS25415 0.82 -0.6 2,342 - ABID97_RS25415 0.82 -0.8 2,606 - -0.1 2,606 - +0.4 3,073 - ABID97_RS25420 0.65 +0.3
Or see this region's nucleotide sequence