Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18405

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18390 and ABID97_RS18395 overlap by 4 nucleotidesABID97_RS18395 and ABID97_RS18400 overlap by 4 nucleotidesABID97_RS18400 and ABID97_RS18405 overlap by 4 nucleotidesABID97_RS18405 and ABID97_RS18410 are separated by 250 nucleotidesABID97_RS18410 and ABID97_RS18415 are separated by 13 nucleotides ABID97_RS18390: ABID97_RS18390 - hypothetical protein, at 3,798,399 to 3,798,680 _RS18390 ABID97_RS18395: ABID97_RS18395 - hypothetical protein, at 3,798,677 to 3,798,910 _RS18395 ABID97_RS18400: ABID97_RS18400 - hypothetical protein, at 3,798,907 to 3,799,221 _RS18400 ABID97_RS18405: ABID97_RS18405 - hypothetical protein, at 3,799,218 to 3,799,742 _RS18405 ABID97_RS18410: ABID97_RS18410 - hypothetical protein, at 3,799,993 to 3,800,226 _RS18410 ABID97_RS18415: ABID97_RS18415 - YqaJ viral recombinase family protein, at 3,800,240 to 3,800,818 _RS18415 Position (kb) 3799 3800Strain fitness (log2 ratio) -1 0 1 2at 3798.219 kb on - strandat 3798.571 kb on + strand, within ABID97_RS18390at 3798.592 kb on - strand, within ABID97_RS18390at 3799.348 kb on + strand, within ABID97_RS18405at 3799.348 kb on + strand, within ABID97_RS18405at 3799.349 kb on - strand, within ABID97_RS18405at 3799.349 kb on - strand, within ABID97_RS18405at 3799.349 kb on - strand, within ABID97_RS18405at 3799.453 kb on + strand, within ABID97_RS18405at 3799.453 kb on + strand, within ABID97_RS18405at 3799.453 kb on + strand, within ABID97_RS18405at 3799.453 kb on + strand, within ABID97_RS18405at 3799.454 kb on - strand, within ABID97_RS18405at 3799.504 kb on + strand, within ABID97_RS18405at 3799.507 kb on + strand, within ABID97_RS18405at 3799.507 kb on + strand, within ABID97_RS18405at 3800.147 kb on - strand, within ABID97_RS18410at 3800.455 kb on - strand, within ABID97_RS18415at 3800.634 kb on + strand, within ABID97_RS18415at 3800.674 kb on - strand, within ABID97_RS18415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,798,219 - +0.1
3,798,571 + ABID97_RS18390 0.61 +0.9
3,798,592 - ABID97_RS18390 0.68 +0.6
3,799,348 + ABID97_RS18405 0.25 -1.2
3,799,348 + ABID97_RS18405 0.25 -0.6
3,799,349 - ABID97_RS18405 0.25 -1.4
3,799,349 - ABID97_RS18405 0.25 -0.7
3,799,349 - ABID97_RS18405 0.25 +0.5
3,799,453 + ABID97_RS18405 0.45 -0.6
3,799,453 + ABID97_RS18405 0.45 -0.2
3,799,453 + ABID97_RS18405 0.45 -0.8
3,799,453 + ABID97_RS18405 0.45 -1.0
3,799,454 - ABID97_RS18405 0.45 -1.4
3,799,504 + ABID97_RS18405 0.54 +0.1
3,799,507 + ABID97_RS18405 0.55 -0.6
3,799,507 + ABID97_RS18405 0.55 -1.2
3,800,147 - ABID97_RS18410 0.66 -0.1
3,800,455 - ABID97_RS18415 0.37 -0.8
3,800,634 + ABID97_RS18415 0.68 +2.2
3,800,674 - ABID97_RS18415 0.75 +0.1

Or see this region's nucleotide sequence