Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08295

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08285 and ABID97_RS08290 are separated by 146 nucleotidesABID97_RS08290 and ABID97_RS08295 are separated by 61 nucleotidesABID97_RS08295 and ABID97_RS08300 overlap by 1 nucleotides ABID97_RS08285: ABID97_RS08285 - DUF177 domain-containing protein, at 1,743,648 to 1,744,205 _RS08285 ABID97_RS08290: ABID97_RS08290 - 50S ribosomal protein L32, at 1,744,352 to 1,744,534 _RS08290 ABID97_RS08295: ABID97_RS08295 - phosphate acyltransferase PlsX, at 1,744,596 to 1,745,693 _RS08295 ABID97_RS08300: ABID97_RS08300 - beta-ketoacyl-ACP synthase III, at 1,745,693 to 1,746,670 _RS08300 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -1 0 1at 1743.635 kb on + strandat 1743.636 kb on - strandat 1743.658 kb on + strandat 1743.658 kb on + strandat 1743.658 kb on + strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.659 kb on - strandat 1743.738 kb on + strand, within ABID97_RS08285at 1744.564 kb on + strandat 1744.601 kb on + strandat 1746.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,743,635 + -0.7
1,743,636 - +0.1
1,743,658 + -0.3
1,743,658 + -0.5
1,743,658 + -0.7
1,743,659 - -0.6
1,743,659 - -0.3
1,743,659 - -0.1
1,743,659 - -1.1
1,743,659 - -0.1
1,743,659 - -0.4
1,743,738 + ABID97_RS08285 0.16 -1.0
1,744,564 + -0.4
1,744,601 + +0.2
1,746,668 + -0.7

Or see this region's nucleotide sequence