Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04240 and ABID97_RS04245 are separated by 103 nucleotides ABID97_RS04245 and ABID97_RS04250 are separated by 95 nucleotides ABID97_RS04250 and ABID97_RS04255 are separated by 142 nucleotides
ABID97_RS04240: ABID97_RS04240 - phasin family protein, at 871,767 to 872,273
_RS04240
ABID97_RS04245: ABID97_RS04245 - acyl-CoA thioesterase, at 872,377 to 872,820
_RS04245
ABID97_RS04250: ABID97_RS04250 - LysR family transcriptional regulator, at 872,916 to 873,812
_RS04250
ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034
_RS04255
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1 at 872.302 kb on - strand at 872.306 kb on + strand at 872.330 kb on - strand at 872.378 kb on + strand at 872.378 kb on + strand at 872.379 kb on - strand at 872.598 kb on + strand, within ABID97_RS04245 at 872.601 kb on + strand, within ABID97_RS04245 at 872.861 kb on + strand at 872.861 kb on + strand at 873.010 kb on + strand, within ABID97_RS04250 at 873.010 kb on + strand, within ABID97_RS04250 at 873.011 kb on - strand, within ABID97_RS04250 at 873.011 kb on - strand, within ABID97_RS04250 at 873.337 kb on + strand, within ABID97_RS04250 at 873.338 kb on - strand, within ABID97_RS04250 at 873.591 kb on + strand, within ABID97_RS04250 at 873.591 kb on + strand, within ABID97_RS04250 at 873.592 kb on - strand, within ABID97_RS04250 at 873.625 kb on + strand, within ABID97_RS04250 at 873.626 kb on - strand, within ABID97_RS04250 at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand at 873.886 kb on + strand at 873.887 kb on - strand at 873.887 kb on - strand at 873.890 kb on - strand at 874.012 kb on + strand at 874.016 kb on - strand at 874.117 kb on + strand, within ABID97_RS04255 at 874.117 kb on + strand, within ABID97_RS04255 at 874.372 kb on + strand, within ABID97_RS04255 at 874.372 kb on + strand, within ABID97_RS04255 at 874.373 kb on - strand, within ABID97_RS04255 at 874.636 kb on + strand, within ABID97_RS04255 at 874.636 kb on + strand, within ABID97_RS04255
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 872,302 - -1.2 872,306 + -0.8 872,330 - +0.1 872,378 + +0.2 872,378 + +0.3 872,379 - -0.2 872,598 + ABID97_RS04245 0.50 +0.8 872,601 + ABID97_RS04245 0.50 +0.1 872,861 + +0.6 872,861 + +0.7 873,010 + ABID97_RS04250 0.10 -0.7 873,010 + ABID97_RS04250 0.10 +0.1 873,011 - ABID97_RS04250 0.11 +1.4 873,011 - ABID97_RS04250 0.11 +0.3 873,337 + ABID97_RS04250 0.47 -0.5 873,338 - ABID97_RS04250 0.47 -1.8 873,591 + ABID97_RS04250 0.75 -1.3 873,591 + ABID97_RS04250 0.75 -0.4 873,592 - ABID97_RS04250 0.75 -1.9 873,625 + ABID97_RS04250 0.79 -0.6 873,626 - ABID97_RS04250 0.79 -0.7 873,767 - -0.7 873,767 - -0.6 873,767 - -1.7 873,767 - -0.0 873,767 - +0.3 873,886 + -0.7 873,887 - +0.3 873,887 - -0.2 873,890 - +0.3 874,012 + +0.6 874,016 - -0.6 874,117 + ABID97_RS04255 0.15 -0.6 874,117 + ABID97_RS04255 0.15 -0.9 874,372 + ABID97_RS04255 0.39 -0.7 874,372 + ABID97_RS04255 0.39 -0.5 874,373 - ABID97_RS04255 0.39 +0.2 874,636 + ABID97_RS04255 0.63 -0.4 874,636 + ABID97_RS04255 0.63 -0.4
Or see this region's nucleotide sequence