Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02715

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02710 and ABID97_RS02715 are separated by 12 nucleotidesABID97_RS02715 and ABID97_RS02720 are separated by 151 nucleotides ABID97_RS02710: ABID97_RS02710 - metallophosphoesterase, at 552,703 to 553,890 _RS02710 ABID97_RS02715: ABID97_RS02715 - polyhydroxyalkanoate granule-associated phasin, at 553,903 to 554,400 _RS02715 ABID97_RS02720: ABID97_RS02720 - lysylphosphatidylglycerol synthase domain-containing protein, at 554,552 to 555,520 _RS02720 Position (kb) 553 554 555Strain fitness (log2 ratio) -1 0 1 2 3at 553.219 kb on + strand, within ABID97_RS02710at 553.219 kb on + strand, within ABID97_RS02710at 553.219 kb on + strand, within ABID97_RS02710at 553.219 kb on + strand, within ABID97_RS02710at 553.219 kb on + strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.220 kb on - strand, within ABID97_RS02710at 553.384 kb on + strand, within ABID97_RS02710at 553.384 kb on + strand, within ABID97_RS02710at 553.384 kb on + strand, within ABID97_RS02710at 553.384 kb on + strand, within ABID97_RS02710at 553.385 kb on - strand, within ABID97_RS02710at 553.385 kb on - strand, within ABID97_RS02710at 553.385 kb on - strand, within ABID97_RS02710at 553.385 kb on - strand, within ABID97_RS02710at 553.385 kb on - strand, within ABID97_RS02710at 553.387 kb on + strand, within ABID97_RS02710at 553.387 kb on + strand, within ABID97_RS02710at 553.387 kb on + strand, within ABID97_RS02710at 553.388 kb on - strand, within ABID97_RS02710at 553.388 kb on - strand, within ABID97_RS02710at 553.543 kb on + strand, within ABID97_RS02710at 553.543 kb on + strand, within ABID97_RS02710at 553.544 kb on - strand, within ABID97_RS02710at 553.544 kb on - strand, within ABID97_RS02710at 553.795 kb on + strandat 553.795 kb on + strandat 553.795 kb on + strandat 553.795 kb on + strandat 553.795 kb on + strandat 553.796 kb on - strandat 553.796 kb on - strandat 553.796 kb on - strandat 553.796 kb on - strandat 553.796 kb on - strandat 553.796 kb on - strandat 553.980 kb on + strand, within ABID97_RS02715at 553.980 kb on + strand, within ABID97_RS02715at 553.981 kb on - strand, within ABID97_RS02715at 553.981 kb on - strand, within ABID97_RS02715at 554.434 kb on + strandat 554.434 kb on + strandat 554.435 kb on - strandat 554.435 kb on - strandat 554.436 kb on + strandat 554.436 kb on + strandat 554.436 kb on + strandat 554.436 kb on + strandat 554.436 kb on + strandat 554.436 kb on + strandat 554.437 kb on - strandat 554.437 kb on - strandat 554.437 kb on - strandat 554.437 kb on - strandat 554.437 kb on - strandat 554.437 kb on - strandat 554.544 kb on + strandat 554.553 kb on + strandat 554.607 kb on + strandat 554.608 kb on - strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.640 kb on + strandat 554.641 kb on - strandat 554.641 kb on - strandat 554.643 kb on + strandat 554.643 kb on + strandat 554.643 kb on + strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.644 kb on - strandat 554.655 kb on + strand, within ABID97_RS02720at 554.656 kb on - strand, within ABID97_RS02720at 554.656 kb on - strand, within ABID97_RS02720at 554.806 kb on - strand, within ABID97_RS02720at 554.971 kb on - strand, within ABID97_RS02720at 554.971 kb on - strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.990 kb on + strand, within ABID97_RS02720at 554.991 kb on - strand, within ABID97_RS02720at 554.991 kb on - strand, within ABID97_RS02720at 555.090 kb on + strand, within ABID97_RS02720at 555.165 kb on + strand, within ABID97_RS02720at 555.165 kb on + strand, within ABID97_RS02720at 555.166 kb on - strand, within ABID97_RS02720at 555.166 kb on - strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.225 kb on + strand, within ABID97_RS02720at 555.226 kb on - strand, within ABID97_RS02720at 555.226 kb on - strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.300 kb on + strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.301 kb on - strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.309 kb on + strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720at 555.310 kb on - strand, within ABID97_RS02720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
553,219 + ABID97_RS02710 0.43 +1.5
553,219 + ABID97_RS02710 0.43 +0.0
553,219 + ABID97_RS02710 0.43 -0.4
553,219 + ABID97_RS02710 0.43 +1.6
553,219 + ABID97_RS02710 0.43 -0.0
553,220 - ABID97_RS02710 0.44 +0.1
553,220 - ABID97_RS02710 0.44 +3.1
553,220 - ABID97_RS02710 0.44 +0.4
553,220 - ABID97_RS02710 0.44 -0.1
553,220 - ABID97_RS02710 0.44 +0.7
553,220 - ABID97_RS02710 0.44 -0.1
553,220 - ABID97_RS02710 0.44 +0.3
553,384 + ABID97_RS02710 0.57 +1.0
553,384 + ABID97_RS02710 0.57 -0.5
553,384 + ABID97_RS02710 0.57 +0.6
553,384 + ABID97_RS02710 0.57 -0.0
553,385 - ABID97_RS02710 0.57 +1.0
553,385 - ABID97_RS02710 0.57 -1.1
553,385 - ABID97_RS02710 0.57 +0.1
553,385 - ABID97_RS02710 0.57 +0.4
553,385 - ABID97_RS02710 0.57 +0.1
553,387 + ABID97_RS02710 0.58 +0.4
553,387 + ABID97_RS02710 0.58 +0.9
553,387 + ABID97_RS02710 0.58 +0.5
553,388 - ABID97_RS02710 0.58 +0.4
553,388 - ABID97_RS02710 0.58 +0.2
553,543 + ABID97_RS02710 0.71 +0.5
553,543 + ABID97_RS02710 0.71 +0.5
553,544 - ABID97_RS02710 0.71 +0.1
553,544 - ABID97_RS02710 0.71 +0.4
553,795 + +0.5
553,795 + +0.4
553,795 + +0.4
553,795 + +0.2
553,795 + +0.2
553,796 - +1.4
553,796 - +0.5
553,796 - +0.2
553,796 - +0.2
553,796 - +0.3
553,796 - +0.5
553,980 + ABID97_RS02715 0.15 +0.3
553,980 + ABID97_RS02715 0.15 +0.2
553,981 - ABID97_RS02715 0.16 -0.5
553,981 - ABID97_RS02715 0.16 -0.0
554,434 + +0.4
554,434 + +0.0
554,435 - -0.4
554,435 - -1.6
554,436 + -0.0
554,436 + +0.4
554,436 + -0.1
554,436 + +0.1
554,436 + -0.2
554,436 + -0.1
554,437 - +0.2
554,437 - +0.1
554,437 - -0.3
554,437 - -0.8
554,437 - -0.4
554,437 - -0.4
554,544 + -0.1
554,553 + +0.3
554,607 + -0.4
554,608 - -0.0
554,640 + +0.4
554,640 + +0.3
554,640 + -0.6
554,640 + +0.3
554,640 + +0.1
554,640 + +0.2
554,641 - -0.6
554,641 - -0.2
554,643 + +0.6
554,643 + +0.1
554,643 + +0.3
554,644 - +1.0
554,644 - +0.5
554,644 - -0.4
554,644 - -0.8
554,655 + ABID97_RS02720 0.11 +0.3
554,656 - ABID97_RS02720 0.11 -0.1
554,656 - ABID97_RS02720 0.11 +0.2
554,806 - ABID97_RS02720 0.26 +0.9
554,971 - ABID97_RS02720 0.43 -0.1
554,971 - ABID97_RS02720 0.43 +0.6
554,990 + ABID97_RS02720 0.45 +0.3
554,990 + ABID97_RS02720 0.45 -0.6
554,990 + ABID97_RS02720 0.45 +0.2
554,991 - ABID97_RS02720 0.45 +0.4
554,991 - ABID97_RS02720 0.45 -1.0
555,090 + ABID97_RS02720 0.56 -0.8
555,165 + ABID97_RS02720 0.63 +0.1
555,165 + ABID97_RS02720 0.63 -0.1
555,166 - ABID97_RS02720 0.63 -0.2
555,166 - ABID97_RS02720 0.63 -0.1
555,225 + ABID97_RS02720 0.69 -0.4
555,225 + ABID97_RS02720 0.69 -0.6
555,225 + ABID97_RS02720 0.69 +0.3
555,226 - ABID97_RS02720 0.70 +0.1
555,226 - ABID97_RS02720 0.70 -0.3
555,300 + ABID97_RS02720 0.77 -0.2
555,300 + ABID97_RS02720 0.77 -0.5
555,300 + ABID97_RS02720 0.77 -0.7
555,300 + ABID97_RS02720 0.77 +1.1
555,300 + ABID97_RS02720 0.77 -0.1
555,300 + ABID97_RS02720 0.77 -0.5
555,300 + ABID97_RS02720 0.77 -0.1
555,301 - ABID97_RS02720 0.77 -0.4
555,301 - ABID97_RS02720 0.77 -0.6
555,301 - ABID97_RS02720 0.77 -0.7
555,301 - ABID97_RS02720 0.77 -1.3
555,301 - ABID97_RS02720 0.77 -0.0
555,301 - ABID97_RS02720 0.77 -0.7
555,301 - ABID97_RS02720 0.77 -0.1
555,301 - ABID97_RS02720 0.77 -0.2
555,301 - ABID97_RS02720 0.77 +1.1
555,301 - ABID97_RS02720 0.77 -0.2
555,301 - ABID97_RS02720 0.77 -1.7
555,309 + ABID97_RS02720 0.78 -0.1
555,309 + ABID97_RS02720 0.78 -0.3
555,309 + ABID97_RS02720 0.78 -0.9
555,310 - ABID97_RS02720 0.78 +0.6
555,310 - ABID97_RS02720 0.78 -0.5
555,310 - ABID97_RS02720 0.78 -0.9

Or see this region's nucleotide sequence