Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01135 and ABID97_RS01140 are separated by 210 nucleotides ABID97_RS01140 and ABID97_RS01145 are separated by 31 nucleotides
ABID97_RS01135: ABID97_RS01135 - carboxypeptidase regulatory-like domain-containing protein, at 229,054 to 231,153
_RS01135
ABID97_RS01140: ABID97_RS01140 - LuxR C-terminal-related transcriptional regulator, at 231,364 to 232,350
_RS01140
ABID97_RS01145: ABID97_RS01145 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 232,382 to 234,502
_RS01145
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1
2 at 230.903 kb on + strand, within ABID97_RS01135 at 230.964 kb on + strand at 231.239 kb on + strand at 231.240 kb on - strand at 231.240 kb on - strand at 231.240 kb on - strand at 231.416 kb on - strand at 231.691 kb on + strand, within ABID97_RS01140 at 231.709 kb on + strand, within ABID97_RS01140 at 231.709 kb on + strand, within ABID97_RS01140 at 231.710 kb on - strand, within ABID97_RS01140 at 231.710 kb on - strand, within ABID97_RS01140 at 231.973 kb on + strand, within ABID97_RS01140 at 231.974 kb on - strand, within ABID97_RS01140 at 231.974 kb on - strand, within ABID97_RS01140 at 231.974 kb on - strand, within ABID97_RS01140 at 232.085 kb on - strand, within ABID97_RS01140 at 232.288 kb on + strand at 232.288 kb on + strand at 232.528 kb on - strand at 232.650 kb on + strand, within ABID97_RS01145 at 232.732 kb on - strand, within ABID97_RS01145 at 232.812 kb on + strand, within ABID97_RS01145 at 232.812 kb on + strand, within ABID97_RS01145 at 232.813 kb on - strand, within ABID97_RS01145 at 232.813 kb on - strand, within ABID97_RS01145 at 232.813 kb on - strand, within ABID97_RS01145 at 232.833 kb on + strand, within ABID97_RS01145 at 232.833 kb on + strand, within ABID97_RS01145 at 232.833 kb on + strand, within ABID97_RS01145 at 232.905 kb on + strand, within ABID97_RS01145 at 233.190 kb on + strand, within ABID97_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 230,903 + ABID97_RS01135 0.88 -0.1 230,964 + +0.3 231,239 + +0.5 231,240 - -1.0 231,240 - -0.1 231,240 - +0.1 231,416 - +0.6 231,691 + ABID97_RS01140 0.33 +0.6 231,709 + ABID97_RS01140 0.35 +1.5 231,709 + ABID97_RS01140 0.35 +0.5 231,710 - ABID97_RS01140 0.35 +0.2 231,710 - ABID97_RS01140 0.35 +1.1 231,973 + ABID97_RS01140 0.62 +0.2 231,974 - ABID97_RS01140 0.62 -0.4 231,974 - ABID97_RS01140 0.62 -0.5 231,974 - ABID97_RS01140 0.62 +0.6 232,085 - ABID97_RS01140 0.73 +0.6 232,288 + +0.2 232,288 + +0.9 232,528 - +0.5 232,650 + ABID97_RS01145 0.13 +1.8 232,732 - ABID97_RS01145 0.17 -0.1 232,812 + ABID97_RS01145 0.20 -0.0 232,812 + ABID97_RS01145 0.20 -0.8 232,813 - ABID97_RS01145 0.20 +0.6 232,813 - ABID97_RS01145 0.20 +0.6 232,813 - ABID97_RS01145 0.20 -0.5 232,833 + ABID97_RS01145 0.21 +0.4 232,833 + ABID97_RS01145 0.21 +0.2 232,833 + ABID97_RS01145 0.21 +0.3 232,905 + ABID97_RS01145 0.25 +0.1 233,190 + ABID97_RS01145 0.38 +0.0
Or see this region's nucleotide sequence