Strain Fitness in Escherichia coli BW25113 around b3668
Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Glutamine (N) |
---|---|---|---|---|---|
remove | |||||
3,845,709 | - | uhpC | b3667 | 0.29 | -0.4 |
3,845,709 | - | uhpC | b3667 | 0.29 | +0.5 |
3,845,719 | - | uhpC | b3667 | 0.30 | -0.8 |
3,845,776 | + | uhpC | b3667 | 0.34 | -0.3 |
3,845,809 | + | uhpC | b3667 | 0.36 | +0.1 |
3,845,809 | + | uhpC | b3667 | 0.36 | +0.6 |
3,845,855 | + | uhpC | b3667 | 0.40 | -0.0 |
3,845,857 | + | uhpC | b3667 | 0.40 | +0.3 |
3,845,865 | - | uhpC | b3667 | 0.41 | +1.1 |
3,845,865 | - | uhpC | b3667 | 0.41 | +0.2 |
3,845,865 | - | uhpC | b3667 | 0.41 | -0.0 |
3,845,950 | - | uhpC | b3667 | 0.47 | -0.9 |
3,845,968 | + | uhpC | b3667 | 0.48 | -0.2 |
3,845,991 | + | uhpC | b3667 | 0.50 | +0.2 |
3,846,103 | + | uhpC | b3667 | 0.59 | -0.3 |
3,846,133 | + | uhpC | b3667 | 0.61 | -0.3 |
3,846,171 | + | uhpC | b3667 | 0.64 | -0.5 |
3,846,171 | + | uhpC | b3667 | 0.64 | +0.7 |
3,846,176 | - | uhpC | b3667 | 0.64 | -1.2 |
3,846,176 | - | uhpC | b3667 | 0.64 | +0.1 |
3,846,236 | - | uhpC | b3667 | 0.69 | +0.2 |
3,846,271 | + | uhpC | b3667 | 0.71 | -0.5 |
3,846,271 | + | uhpC | b3667 | 0.71 | -0.5 |
3,846,284 | - | uhpC | b3667 | 0.72 | -0.5 |
3,846,344 | + | uhpC | b3667 | 0.77 | -0.5 |
3,846,344 | + | uhpC | b3667 | 0.77 | +0.4 |
3,846,347 | - | uhpC | b3667 | 0.77 | +0.0 |
3,846,410 | - | uhpC | b3667 | 0.82 | -0.3 |
3,846,411 | + | uhpC | b3667 | 0.82 | -0.2 |
3,846,418 | - | uhpC | b3667 | 0.83 | +0.3 |
3,846,419 | - | uhpC | b3667 | 0.83 | -1.7 |
3,846,429 | - | uhpC | b3667 | 0.83 | -0.1 |
3,846,429 | - | uhpC | b3667 | 0.83 | +0.2 |
3,846,429 | - | uhpC | b3667 | 0.83 | +0.9 |
3,846,429 | - | uhpC | b3667 | 0.83 | +0.4 |
3,846,554 | - | +0.8 | |||
3,846,604 | + | +0.4 | |||
3,846,655 | + | +0.7 | |||
3,846,674 | - | +1.7 | |||
3,846,674 | - | -0.2 | |||
3,846,685 | - | +0.3 | |||
3,846,689 | + | -0.7 | |||
3,846,815 | - | uhpB | b3668 | 0.11 | +0.7 |
3,846,815 | - | uhpB | b3668 | 0.11 | +0.5 |
3,846,965 | + | uhpB | b3668 | 0.20 | +0.5 |
3,846,965 | + | uhpB | b3668 | 0.20 | -0.9 |
3,846,983 | - | uhpB | b3668 | 0.22 | -0.3 |
3,846,983 | - | uhpB | b3668 | 0.22 | +1.2 |
3,847,125 | + | uhpB | b3668 | 0.31 | +0.4 |
3,847,125 | + | uhpB | b3668 | 0.31 | +0.5 |
3,847,172 | - | +0.1 | |||
3,847,174 | + | uhpB | b3668 | 0.34 | +0.5 |
3,847,190 | + | uhpB | b3668 | 0.35 | -0.5 |
3,847,203 | + | uhpB | b3668 | 0.36 | -0.0 |
3,847,243 | - | uhpB | b3668 | 0.39 | -0.0 |
3,847,253 | - | uhpB | b3668 | 0.40 | -0.0 |
3,847,264 | - | uhpB | b3668 | 0.40 | +0.5 |
3,847,327 | + | uhpB | b3668 | 0.45 | +0.2 |
3,847,370 | + | uhpB | b3668 | 0.47 | -0.8 |
3,847,422 | - | uhpB | b3668 | 0.51 | -0.3 |
3,847,422 | - | uhpB | b3668 | 0.51 | +0.9 |
3,847,464 | + | uhpB | b3668 | 0.54 | -0.1 |
3,847,480 | + | uhpB | b3668 | 0.55 | +0.1 |
3,847,488 | - | uhpB | b3668 | 0.55 | -0.0 |
3,847,494 | - | uhpB | b3668 | 0.56 | -0.8 |
3,847,516 | + | uhpB | b3668 | 0.57 | -0.2 |
3,847,593 | + | uhpB | b3668 | 0.62 | +0.9 |
3,847,593 | + | uhpB | b3668 | 0.62 | -0.5 |
3,847,665 | - | uhpB | b3668 | 0.67 | +0.7 |
3,847,665 | - | uhpB | b3668 | 0.67 | +0.1 |
3,847,723 | - | uhpB | b3668 | 0.71 | +0.3 |
3,847,815 | + | uhpB | b3668 | 0.77 | +0.4 |
3,847,815 | + | uhpB | b3668 | 0.77 | -0.3 |
3,847,825 | - | uhpB | b3668 | 0.78 | -0.5 |
3,847,825 | - | uhpB | b3668 | 0.78 | -0.1 |
3,847,828 | - | uhpB | b3668 | 0.78 | -0.3 |
3,847,828 | - | uhpB | b3668 | 0.78 | -0.6 |
3,847,880 | - | uhpB | b3668 | 0.81 | -0.2 |
3,847,883 | - | uhpB | b3668 | 0.82 | -1.3 |
3,847,883 | - | uhpB | b3668 | 0.82 | -0.2 |
3,847,942 | + | uhpB | b3668 | 0.85 | -0.3 |
3,848,011 | - | +1.3 | |||
3,848,016 | - | +0.0 | |||
3,848,029 | - | +0.6 | |||
3,848,029 | - | -0.3 | |||
3,848,043 | + | +0.4 | |||
3,848,045 | + | -1.0 | |||
3,848,047 | + | +0.3 | |||
3,848,074 | - | -0.1 | |||
3,848,074 | - | +0.6 | |||
3,848,083 | - | +0.2 | |||
3,848,094 | - | -0.3 | |||
3,848,129 | + | +0.5 | |||
3,848,129 | + | +0.2 | |||
3,848,163 | - | -1.5 | |||
3,848,165 | + | +0.2 | |||
3,848,193 | + | -0.5 | |||
3,848,193 | + | +0.2 | |||
3,848,196 | - | -0.1 | |||
3,848,237 | + | uhpA | b3669 | 0.13 | -0.2 |
3,848,250 | - | uhpA | b3669 | 0.15 | +0.7 |
3,848,261 | + | uhpA | b3669 | 0.17 | +1.0 |
3,848,285 | - | uhpA | b3669 | 0.21 | -0.3 |
3,848,370 | - | uhpA | b3669 | 0.36 | +0.3 |
3,848,439 | + | uhpA | b3669 | 0.47 | -1.8 |
3,848,492 | - | uhpA | b3669 | 0.56 | -0.9 |
3,848,492 | - | uhpA | b3669 | 0.56 | +0.5 |
3,848,494 | + | uhpA | b3669 | 0.57 | +0.1 |
3,848,494 | + | uhpA | b3669 | 0.57 | -0.0 |
3,848,494 | + | uhpA | b3669 | 0.57 | +0.3 |
3,848,494 | + | uhpA | b3669 | 0.57 | -0.1 |
3,848,504 | + | uhpA | b3669 | 0.58 | -0.1 |
3,848,504 | + | uhpA | b3669 | 0.58 | -0.9 |
3,848,524 | - | uhpA | b3669 | 0.62 | +0.3 |
3,848,524 | - | uhpA | b3669 | 0.62 | +1.1 |
3,848,524 | - | uhpA | b3669 | 0.62 | +0.5 |
3,848,526 | - | uhpA | b3669 | 0.62 | -0.3 |
3,848,565 | - | uhpA | b3669 | 0.69 | +0.4 |
3,848,565 | - | uhpA | b3669 | 0.69 | -0.3 |
3,848,571 | + | uhpA | b3669 | 0.70 | -0.3 |
3,848,571 | + | uhpA | b3669 | 0.70 | +0.7 |
3,848,577 | + | uhpA | b3669 | 0.71 | -0.4 |
3,848,585 | - | uhpA | b3669 | 0.72 | -0.9 |
3,848,595 | + | uhpA | b3669 | 0.74 | -0.8 |
3,848,603 | - | uhpA | b3669 | 0.75 | -0.8 |
3,848,608 | - | uhpA | b3669 | 0.76 | +0.4 |
3,848,610 | - | uhpA | b3669 | 0.76 | -0.1 |
3,848,719 | + | +1.2 | |||
3,848,734 | + | -0.4 | |||
3,848,904 | - | ilvN | b3670 | 0.27 | -1.0 |
3,848,921 | + | ilvN | b3670 | 0.33 | -2.0 |
3,848,950 | + | ilvN | b3670 | 0.43 | -1.4 |
3,848,953 | + | ilvN | b3670 | 0.44 | -1.9 |
3,848,953 | + | ilvN | b3670 | 0.44 | +0.3 |
3,848,958 | - | ilvN | b3670 | 0.46 | -0.5 |
3,848,958 | - | ilvN | b3670 | 0.46 | -0.3 |
3,848,966 | + | ilvN | b3670 | 0.48 | -2.1 |
3,848,978 | + | ilvN | b3670 | 0.53 | -2.0 |
3,848,978 | + | ilvN | b3670 | 0.53 | -2.7 |
3,848,986 | - | ilvN | b3670 | 0.55 | -1.2 |
3,849,000 | - | ilvN | b3670 | 0.60 | -1.3 |
3,849,000 | - | ilvN | b3670 | 0.60 | -1.8 |
3,849,044 | - | ilvN | b3670 | 0.75 | -0.6 |
3,849,044 | - | ilvN | b3670 | 0.75 | -0.7 |
3,849,044 | - | ilvN | b3670 | 0.75 | -0.9 |
3,849,050 | + | ilvN | b3670 | 0.77 | -2.1 |
3,849,050 | + | ilvN | b3670 | 0.77 | -1.5 |
3,849,055 | - | ilvN | b3670 | 0.79 | -1.2 |
3,849,103 | - | -0.0 | |||
3,849,103 | - | +0.1 | |||
3,849,110 | - | +0.4 | |||
3,849,140 | - | -1.5 |
Or see this region's nucleotide sequence