Strain Fitness in Escherichia coli BW25113 around b3668

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuhpC and uhpB are separated by 9 nucleotidesuhpB and uhpA overlap by 1 nucleotidesuhpA and ilvN are separated by 75 nucleotidesilvN and ilvB are separated by 3 nucleotides b3667: uhpC - regulator of uhpT (VIMSS), at 3,845,328 to 3,846,647 uhpC b3668: uhpB - sensor histidine protein kinase phosphorylates UhpA (VIMSS), at 3,846,657 to 3,848,159 uhpB b3669: uhpA - DNA-binding response regulator in two-component regulatory system wtih UhpB (NCBI), at 3,848,159 to 3,848,749 uhpA b3670: ilvN - acetolactate synthase small subunit (NCBI), at 3,848,825 to 3,849,115 ilvN b3671: ilvB - acetolactate synthase large subunit (NCBI), at 3,849,119 to 3,850,807 ilvB Position (kb) 3846 3847 3848 3849Strain fitness (log2 ratio) -2 -1 0 1at 3845.709 kb on - strand, within uhpCat 3845.709 kb on - strand, within uhpCat 3845.719 kb on - strand, within uhpCat 3845.776 kb on + strand, within uhpCat 3845.809 kb on + strand, within uhpCat 3845.809 kb on + strand, within uhpCat 3845.855 kb on + strand, within uhpCat 3845.857 kb on + strand, within uhpCat 3845.865 kb on - strand, within uhpCat 3845.865 kb on - strand, within uhpCat 3845.865 kb on - strand, within uhpCat 3845.950 kb on - strand, within uhpCat 3845.968 kb on + strand, within uhpCat 3845.991 kb on + strand, within uhpCat 3846.103 kb on + strand, within uhpCat 3846.133 kb on + strand, within uhpCat 3846.171 kb on + strand, within uhpCat 3846.171 kb on + strand, within uhpCat 3846.176 kb on - strand, within uhpCat 3846.176 kb on - strand, within uhpCat 3846.236 kb on - strand, within uhpCat 3846.271 kb on + strand, within uhpCat 3846.271 kb on + strand, within uhpCat 3846.284 kb on - strand, within uhpCat 3846.344 kb on + strand, within uhpCat 3846.344 kb on + strand, within uhpCat 3846.347 kb on - strand, within uhpCat 3846.410 kb on - strand, within uhpCat 3846.411 kb on + strand, within uhpCat 3846.418 kb on - strand, within uhpCat 3846.419 kb on - strand, within uhpCat 3846.429 kb on - strand, within uhpCat 3846.429 kb on - strand, within uhpCat 3846.429 kb on - strand, within uhpCat 3846.429 kb on - strand, within uhpCat 3846.554 kb on - strandat 3846.604 kb on + strandat 3846.655 kb on + strandat 3846.674 kb on - strandat 3846.674 kb on - strandat 3846.685 kb on - strandat 3846.689 kb on + strandat 3846.815 kb on - strand, within uhpBat 3846.815 kb on - strand, within uhpBat 3846.965 kb on + strand, within uhpBat 3846.965 kb on + strand, within uhpBat 3846.983 kb on - strand, within uhpBat 3846.983 kb on - strand, within uhpBat 3847.125 kb on + strand, within uhpBat 3847.125 kb on + strand, within uhpBat 3847.172 kb on - strandat 3847.174 kb on + strand, within uhpBat 3847.190 kb on + strand, within uhpBat 3847.203 kb on + strand, within uhpBat 3847.243 kb on - strand, within uhpBat 3847.253 kb on - strand, within uhpBat 3847.264 kb on - strand, within uhpBat 3847.327 kb on + strand, within uhpBat 3847.370 kb on + strand, within uhpBat 3847.422 kb on - strand, within uhpBat 3847.422 kb on - strand, within uhpBat 3847.464 kb on + strand, within uhpBat 3847.480 kb on + strand, within uhpBat 3847.488 kb on - strand, within uhpBat 3847.494 kb on - strand, within uhpBat 3847.516 kb on + strand, within uhpBat 3847.593 kb on + strand, within uhpBat 3847.593 kb on + strand, within uhpBat 3847.665 kb on - strand, within uhpBat 3847.665 kb on - strand, within uhpBat 3847.723 kb on - strand, within uhpBat 3847.815 kb on + strand, within uhpBat 3847.815 kb on + strand, within uhpBat 3847.825 kb on - strand, within uhpBat 3847.825 kb on - strand, within uhpBat 3847.828 kb on - strand, within uhpBat 3847.828 kb on - strand, within uhpBat 3847.880 kb on - strand, within uhpBat 3847.883 kb on - strand, within uhpBat 3847.883 kb on - strand, within uhpBat 3847.942 kb on + strand, within uhpBat 3848.011 kb on - strandat 3848.016 kb on - strandat 3848.029 kb on - strandat 3848.029 kb on - strandat 3848.043 kb on + strandat 3848.045 kb on + strandat 3848.047 kb on + strandat 3848.074 kb on - strandat 3848.074 kb on - strandat 3848.083 kb on - strandat 3848.094 kb on - strandat 3848.129 kb on + strandat 3848.129 kb on + strandat 3848.163 kb on - strandat 3848.165 kb on + strandat 3848.193 kb on + strandat 3848.193 kb on + strandat 3848.196 kb on - strandat 3848.237 kb on + strand, within uhpAat 3848.250 kb on - strand, within uhpAat 3848.261 kb on + strand, within uhpAat 3848.285 kb on - strand, within uhpAat 3848.370 kb on - strand, within uhpAat 3848.439 kb on + strand, within uhpAat 3848.492 kb on - strand, within uhpAat 3848.492 kb on - strand, within uhpAat 3848.494 kb on + strand, within uhpAat 3848.494 kb on + strand, within uhpAat 3848.494 kb on + strand, within uhpAat 3848.494 kb on + strand, within uhpAat 3848.504 kb on + strand, within uhpAat 3848.504 kb on + strand, within uhpAat 3848.524 kb on - strand, within uhpAat 3848.524 kb on - strand, within uhpAat 3848.524 kb on - strand, within uhpAat 3848.526 kb on - strand, within uhpAat 3848.565 kb on - strand, within uhpAat 3848.565 kb on - strand, within uhpAat 3848.571 kb on + strand, within uhpAat 3848.571 kb on + strand, within uhpAat 3848.577 kb on + strand, within uhpAat 3848.585 kb on - strand, within uhpAat 3848.595 kb on + strand, within uhpAat 3848.603 kb on - strand, within uhpAat 3848.608 kb on - strand, within uhpAat 3848.610 kb on - strand, within uhpAat 3848.719 kb on + strandat 3848.734 kb on + strandat 3848.904 kb on - strand, within ilvNat 3848.921 kb on + strand, within ilvNat 3848.950 kb on + strand, within ilvNat 3848.953 kb on + strand, within ilvNat 3848.953 kb on + strand, within ilvNat 3848.958 kb on - strand, within ilvNat 3848.958 kb on - strand, within ilvNat 3848.966 kb on + strand, within ilvNat 3848.978 kb on + strand, within ilvNat 3848.978 kb on + strand, within ilvNat 3848.986 kb on - strand, within ilvNat 3849.000 kb on - strand, within ilvNat 3849.000 kb on - strand, within ilvNat 3849.044 kb on - strand, within ilvNat 3849.044 kb on - strand, within ilvNat 3849.044 kb on - strand, within ilvNat 3849.050 kb on + strand, within ilvNat 3849.050 kb on + strand, within ilvNat 3849.055 kb on - strand, within ilvNat 3849.103 kb on - strandat 3849.103 kb on - strandat 3849.110 kb on - strandat 3849.140 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,845,709 - uhpC b3667 0.29 -0.4
3,845,709 - uhpC b3667 0.29 +0.5
3,845,719 - uhpC b3667 0.30 -0.8
3,845,776 + uhpC b3667 0.34 -0.3
3,845,809 + uhpC b3667 0.36 +0.1
3,845,809 + uhpC b3667 0.36 +0.6
3,845,855 + uhpC b3667 0.40 -0.0
3,845,857 + uhpC b3667 0.40 +0.3
3,845,865 - uhpC b3667 0.41 +1.1
3,845,865 - uhpC b3667 0.41 +0.2
3,845,865 - uhpC b3667 0.41 -0.0
3,845,950 - uhpC b3667 0.47 -0.9
3,845,968 + uhpC b3667 0.48 -0.2
3,845,991 + uhpC b3667 0.50 +0.2
3,846,103 + uhpC b3667 0.59 -0.3
3,846,133 + uhpC b3667 0.61 -0.3
3,846,171 + uhpC b3667 0.64 -0.5
3,846,171 + uhpC b3667 0.64 +0.7
3,846,176 - uhpC b3667 0.64 -1.2
3,846,176 - uhpC b3667 0.64 +0.1
3,846,236 - uhpC b3667 0.69 +0.2
3,846,271 + uhpC b3667 0.71 -0.5
3,846,271 + uhpC b3667 0.71 -0.5
3,846,284 - uhpC b3667 0.72 -0.5
3,846,344 + uhpC b3667 0.77 -0.5
3,846,344 + uhpC b3667 0.77 +0.4
3,846,347 - uhpC b3667 0.77 +0.0
3,846,410 - uhpC b3667 0.82 -0.3
3,846,411 + uhpC b3667 0.82 -0.2
3,846,418 - uhpC b3667 0.83 +0.3
3,846,419 - uhpC b3667 0.83 -1.7
3,846,429 - uhpC b3667 0.83 -0.1
3,846,429 - uhpC b3667 0.83 +0.2
3,846,429 - uhpC b3667 0.83 +0.9
3,846,429 - uhpC b3667 0.83 +0.4
3,846,554 - +0.8
3,846,604 + +0.4
3,846,655 + +0.7
3,846,674 - +1.7
3,846,674 - -0.2
3,846,685 - +0.3
3,846,689 + -0.7
3,846,815 - uhpB b3668 0.11 +0.7
3,846,815 - uhpB b3668 0.11 +0.5
3,846,965 + uhpB b3668 0.20 +0.5
3,846,965 + uhpB b3668 0.20 -0.9
3,846,983 - uhpB b3668 0.22 -0.3
3,846,983 - uhpB b3668 0.22 +1.2
3,847,125 + uhpB b3668 0.31 +0.4
3,847,125 + uhpB b3668 0.31 +0.5
3,847,172 - +0.1
3,847,174 + uhpB b3668 0.34 +0.5
3,847,190 + uhpB b3668 0.35 -0.5
3,847,203 + uhpB b3668 0.36 -0.0
3,847,243 - uhpB b3668 0.39 -0.0
3,847,253 - uhpB b3668 0.40 -0.0
3,847,264 - uhpB b3668 0.40 +0.5
3,847,327 + uhpB b3668 0.45 +0.2
3,847,370 + uhpB b3668 0.47 -0.8
3,847,422 - uhpB b3668 0.51 -0.3
3,847,422 - uhpB b3668 0.51 +0.9
3,847,464 + uhpB b3668 0.54 -0.1
3,847,480 + uhpB b3668 0.55 +0.1
3,847,488 - uhpB b3668 0.55 -0.0
3,847,494 - uhpB b3668 0.56 -0.8
3,847,516 + uhpB b3668 0.57 -0.2
3,847,593 + uhpB b3668 0.62 +0.9
3,847,593 + uhpB b3668 0.62 -0.5
3,847,665 - uhpB b3668 0.67 +0.7
3,847,665 - uhpB b3668 0.67 +0.1
3,847,723 - uhpB b3668 0.71 +0.3
3,847,815 + uhpB b3668 0.77 +0.4
3,847,815 + uhpB b3668 0.77 -0.3
3,847,825 - uhpB b3668 0.78 -0.5
3,847,825 - uhpB b3668 0.78 -0.1
3,847,828 - uhpB b3668 0.78 -0.3
3,847,828 - uhpB b3668 0.78 -0.6
3,847,880 - uhpB b3668 0.81 -0.2
3,847,883 - uhpB b3668 0.82 -1.3
3,847,883 - uhpB b3668 0.82 -0.2
3,847,942 + uhpB b3668 0.85 -0.3
3,848,011 - +1.3
3,848,016 - +0.0
3,848,029 - +0.6
3,848,029 - -0.3
3,848,043 + +0.4
3,848,045 + -1.0
3,848,047 + +0.3
3,848,074 - -0.1
3,848,074 - +0.6
3,848,083 - +0.2
3,848,094 - -0.3
3,848,129 + +0.5
3,848,129 + +0.2
3,848,163 - -1.5
3,848,165 + +0.2
3,848,193 + -0.5
3,848,193 + +0.2
3,848,196 - -0.1
3,848,237 + uhpA b3669 0.13 -0.2
3,848,250 - uhpA b3669 0.15 +0.7
3,848,261 + uhpA b3669 0.17 +1.0
3,848,285 - uhpA b3669 0.21 -0.3
3,848,370 - uhpA b3669 0.36 +0.3
3,848,439 + uhpA b3669 0.47 -1.8
3,848,492 - uhpA b3669 0.56 -0.9
3,848,492 - uhpA b3669 0.56 +0.5
3,848,494 + uhpA b3669 0.57 +0.1
3,848,494 + uhpA b3669 0.57 -0.0
3,848,494 + uhpA b3669 0.57 +0.3
3,848,494 + uhpA b3669 0.57 -0.1
3,848,504 + uhpA b3669 0.58 -0.1
3,848,504 + uhpA b3669 0.58 -0.9
3,848,524 - uhpA b3669 0.62 +0.3
3,848,524 - uhpA b3669 0.62 +1.1
3,848,524 - uhpA b3669 0.62 +0.5
3,848,526 - uhpA b3669 0.62 -0.3
3,848,565 - uhpA b3669 0.69 +0.4
3,848,565 - uhpA b3669 0.69 -0.3
3,848,571 + uhpA b3669 0.70 -0.3
3,848,571 + uhpA b3669 0.70 +0.7
3,848,577 + uhpA b3669 0.71 -0.4
3,848,585 - uhpA b3669 0.72 -0.9
3,848,595 + uhpA b3669 0.74 -0.8
3,848,603 - uhpA b3669 0.75 -0.8
3,848,608 - uhpA b3669 0.76 +0.4
3,848,610 - uhpA b3669 0.76 -0.1
3,848,719 + +1.2
3,848,734 + -0.4
3,848,904 - ilvN b3670 0.27 -1.0
3,848,921 + ilvN b3670 0.33 -2.0
3,848,950 + ilvN b3670 0.43 -1.4
3,848,953 + ilvN b3670 0.44 -1.9
3,848,953 + ilvN b3670 0.44 +0.3
3,848,958 - ilvN b3670 0.46 -0.5
3,848,958 - ilvN b3670 0.46 -0.3
3,848,966 + ilvN b3670 0.48 -2.1
3,848,978 + ilvN b3670 0.53 -2.0
3,848,978 + ilvN b3670 0.53 -2.7
3,848,986 - ilvN b3670 0.55 -1.2
3,849,000 - ilvN b3670 0.60 -1.3
3,849,000 - ilvN b3670 0.60 -1.8
3,849,044 - ilvN b3670 0.75 -0.6
3,849,044 - ilvN b3670 0.75 -0.7
3,849,044 - ilvN b3670 0.75 -0.9
3,849,050 + ilvN b3670 0.77 -2.1
3,849,050 + ilvN b3670 0.77 -1.5
3,849,055 - ilvN b3670 0.79 -1.2
3,849,103 - -0.0
3,849,103 - +0.1
3,849,110 - +0.4
3,849,140 - -1.5

Or see this region's nucleotide sequence