Strain Fitness in Pseudomonas sp. RS175 around PFR28_04992

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
5,690,937	+				+1.1
5,690,937	+				-0.8
5,690,937	+				-1.6
5,690,938	-				+1.3
5,690,938	-				+1.8
5,690,938	-				-2.4
5,690,938	-				-3.1
5,690,938	-				-1.5
5,690,938	-				+0.9
5,690,938	-				-1.3
5,691,022	+		PFR28_04990	0.34	+0.2
5,691,022	+		PFR28_04990	0.34	-0.8
5,691,022	+		PFR28_04990	0.34	-0.3
5,691,095	+		PFR28_04990	0.60	+0.9
5,691,095	+		PFR28_04990	0.60	+0.2
5,691,095	+		PFR28_04990	0.60	-0.3
5,691,095	+		PFR28_04990	0.60	-1.0
5,691,095	+		PFR28_04990	0.60	+0.7
5,691,096	-		PFR28_04990	0.61	+0.8
5,691,096	-		PFR28_04990	0.61	+1.1
5,691,189	+				-2.1
5,691,392	+				-0.1
5,691,396	+				-2.2
5,691,396	+				-3.2
5,691,397	-				-0.7
5,691,397	-				-1.5
5,691,397	-				+0.7
5,691,405	+				-0.7
5,691,405	+				+0.4
5,691,406	-				+0.3
5,691,537	+		PFR28_04991	0.16	+0.6
5,691,573	+		PFR28_04991	0.24	+0.6
5,691,573	+		PFR28_04991	0.24	+0.2
5,691,574	-		PFR28_04991	0.24	-0.4
5,691,574	-		PFR28_04991	0.24	-0.4
5,691,574	-		PFR28_04991	0.24	+0.6
5,691,574	-		PFR28_04991	0.24	+0.6
5,691,597	-		PFR28_04991	0.30	-2.1
5,691,604	-		PFR28_04991	0.31	+0.2
5,691,687	-		PFR28_04991	0.51	+0.1
5,691,720	-		PFR28_04991	0.59	+1.1
5,691,766	+		PFR28_04991	0.70	+1.7
5,691,800	+		PFR28_04991	0.78	-1.0
5,691,965	-				+0.7
5,692,001	-		PFR28_04992	0.11	-2.9
5,692,549	-		PFR28_04992	0.70	-1.5
5,692,807	-				+0.4
5,692,939	+				+0.2
5,692,940	-				+1.9
5,692,940	-				-1.4
5,692,996	-		PFR28_04993	0.12	+1.4
5,692,996	-		PFR28_04993	0.12	-1.7
5,693,014	+		PFR28_04993	0.15	+0.1
5,693,059	+		PFR28_04993	0.22	-0.3
5,693,059	+		PFR28_04993	0.22	-0.4
5,693,059	+		PFR28_04993	0.22	+1.1
5,693,060	-		PFR28_04993	0.23	+0.6
5,693,120	+		PFR28_04993	0.32	+0.7
5,693,308	+		PFR28_04993	0.62	-2.4
5,693,309	-		PFR28_04993	0.63	-2.5
5,693,419	+		PFR28_04993	0.80	+1.4
5,693,419	+		PFR28_04993	0.80	+0.6
5,693,420	-		PFR28_04993	0.81	+1.6
5,693,420	-		PFR28_04993	0.81	+2.2
5,693,420	-		PFR28_04993	0.81	-1.0
5,693,422	+		PFR28_04993	0.81	-2.5
5,693,610	+				-0.4
5,693,610	+				+1.3
5,693,610	+				+2.0
5,693,610	+				+2.0
5,693,610	+				+1.4
5,693,610	+				-0.2
5,693,610	+				-1.2
5,693,610	+				-0.1
5,693,610	+				+1.2
5,693,610	+				-0.3
5,693,610	+				+0.8
5,693,610	+				-0.2
5,693,610	+				-0.3
5,693,610	+				+0.8
5,693,611	-				+1.3
5,693,611	-				+0.2
5,693,611	-				+0.2
5,693,611	-				+0.5
5,693,611	-				-2.7
5,693,611	-				-0.6
5,693,611	-				-0.3
5,693,611	-				-1.0
5,693,611	-				+0.5
5,693,611	-				+0.3
5,693,611	-				+1.4
5,693,611	-				-1.7
5,693,611	-				-0.2
5,693,611	-				+0.7
5,693,611	-				-0.8
5,693,611	-				+0.0
5,693,611	-				-2.8
5,693,611	-				-0.2
5,693,614	+				-1.2
5,693,614	+				-0.2
5,693,614	+				-2.1
5,693,614	+				-0.6
5,693,614	+				+1.2
5,693,614	+				-1.7
5,693,614	+				-0.8
5,693,614	+				-1.2
5,693,614	+				+1.5
5,693,614	+				+0.3
5,693,614	+				+0.0
5,693,614	+				-0.4
5,693,614	+				+1.2
5,693,614	+				-0.4
5,693,614	+				-0.1
5,693,614	+				-2.7
5,693,614	+				+0.1
5,693,614	+				-0.4
5,693,614	+				-0.1
5,693,615	-				+1.0
5,693,615	-				-1.6
5,693,615	-				-1.1
5,693,615	-				-0.2
5,693,615	-				+0.6
5,693,615	-				-0.7
5,693,615	-				-0.8
5,693,615	-				+1.2
5,693,615	-				-1.1
5,693,615	-				-1.2
5,693,615	-				-0.6
5,693,615	-				-0.4
5,693,615	-				+0.7
5,693,615	-				-0.3
5,693,615	-				+1.3
5,693,615	-				-0.5
5,693,615	-				+1.3
5,693,615	-				+1.8
5,693,615	-				-2.1
5,693,615	-				-0.3
5,693,615	-				+2.9
5,693,615	-				+1.2
5,693,615	-				-1.5
5,693,644	+				-2.4
5,693,644	+				+0.7
5,693,752	+				-1.7
5,693,752	+				-1.9
5,693,752	+				+0.2
5,693,752	+				-0.6
5,693,752	+				+2.5
5,693,752	+				-0.3
5,693,752	+				+0.0
5,693,753	-				+2.1
5,693,753	-				+0.5
5,693,753	-				-0.4
5,693,755	+				-0.1
5,693,755	+				+0.9
5,693,756	-				-0.6
5,693,756	-				-1.4
5,693,797	+		PFR28_04994	0.12	-0.8
5,693,797	+		PFR28_04994	0.12	+0.1
5,693,797	+		PFR28_04994	0.12	+0.2
5,693,797	+		PFR28_04994	0.12	+0.3
5,693,797	+		PFR28_04994	0.12	+0.6
5,693,797	+		PFR28_04994	0.12	-0.3
5,693,797	+		PFR28_04994	0.12	-3.0
5,693,798	-		PFR28_04994	0.12	+1.0
5,693,798	-		PFR28_04994	0.12	-1.8
5,693,798	-		PFR28_04994	0.12	+2.0
5,693,798	-		PFR28_04994	0.12	+0.6
5,693,798	-		PFR28_04994	0.12	+1.4
5,693,798	-		PFR28_04994	0.12	-0.3
5,693,798	-		PFR28_04994	0.12	+0.8
5,693,798	-		PFR28_04994	0.12	-1.8