Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04735 and PFR28_04736 are separated by 118 nucleotides PFR28_04736 and PFR28_04737 are separated by 155 nucleotides PFR28_04737 and PFR28_04738 are separated by 241 nucleotides
PFR28_04735: PFR28_04735 - 5S ribosomal RNA, at 5,390,794 to 5,390,903
_04735
PFR28_04736: PFR28_04736 - hypothetical protein, at 5,391,022 to 5,391,723
_04736
PFR28_04737: PFR28_04737 - Protein YdgA, at 5,391,879 to 5,393,384
_04737
PFR28_04738: PFR28_04738 - Poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 5,393,626 to 5,396,106
_04738
Position (kb) 5391
5392
5393
5394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5390.892 kb on + strand, within PFR28_04735 at 5390.892 kb on + strand, within PFR28_04735 at 5390.938 kb on + strand at 5390.939 kb on - strand at 5390.939 kb on - strand at 5390.939 kb on - strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.012 kb on + strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.013 kb on - strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.058 kb on + strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.059 kb on - strand at 5391.100 kb on + strand, within PFR28_04736 at 5391.150 kb on + strand, within PFR28_04736 at 5391.151 kb on - strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.154 kb on + strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.155 kb on - strand, within PFR28_04736 at 5391.160 kb on + strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.161 kb on - strand, within PFR28_04736 at 5391.234 kb on - strand, within PFR28_04736 at 5391.234 kb on - strand, within PFR28_04736 at 5391.373 kb on + strand, within PFR28_04736 at 5391.374 kb on - strand, within PFR28_04736 at 5391.374 kb on - strand, within PFR28_04736 at 5391.388 kb on + strand, within PFR28_04736 at 5391.389 kb on - strand, within PFR28_04736 at 5391.389 kb on - strand, within PFR28_04736 at 5391.405 kb on + strand, within PFR28_04736 at 5391.405 kb on + strand, within PFR28_04736 at 5391.406 kb on - strand, within PFR28_04736 at 5391.406 kb on - strand, within PFR28_04736 at 5391.493 kb on - strand, within PFR28_04736 at 5391.493 kb on - strand, within PFR28_04736 at 5391.562 kb on - strand, within PFR28_04736 at 5391.562 kb on - strand, within PFR28_04736 at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.655 kb on + strand at 5391.656 kb on - strand at 5391.656 kb on - strand at 5391.715 kb on + strand at 5391.785 kb on + strand at 5391.884 kb on + strand at 5391.884 kb on + strand at 5391.885 kb on - strand at 5391.885 kb on - strand at 5391.898 kb on + strand at 5391.899 kb on - strand at 5391.899 kb on - strand at 5391.951 kb on + strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5391.952 kb on - strand at 5392.001 kb on + strand at 5392.001 kb on + strand at 5392.001 kb on + strand at 5392.002 kb on - strand at 5392.002 kb on - strand at 5392.157 kb on - strand, within PFR28_04737 at 5392.157 kb on - strand, within PFR28_04737 at 5392.164 kb on - strand, within PFR28_04737 at 5392.235 kb on + strand, within PFR28_04737 at 5392.236 kb on - strand, within PFR28_04737 at 5392.289 kb on + strand, within PFR28_04737 at 5392.323 kb on + strand, within PFR28_04737 at 5392.343 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.461 kb on + strand, within PFR28_04737 at 5392.462 kb on - strand, within PFR28_04737 at 5392.564 kb on - strand, within PFR28_04737 at 5392.570 kb on - strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.572 kb on + strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.573 kb on - strand, within PFR28_04737 at 5392.604 kb on + strand, within PFR28_04737 at 5392.604 kb on + strand, within PFR28_04737 at 5392.605 kb on - strand, within PFR28_04737 at 5392.605 kb on - strand, within PFR28_04737 at 5392.711 kb on - strand, within PFR28_04737 at 5392.819 kb on - strand, within PFR28_04737 at 5392.819 kb on - strand, within PFR28_04737 at 5393.024 kb on + strand, within PFR28_04737 at 5393.025 kb on - strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.143 kb on + strand, within PFR28_04737 at 5393.144 kb on - strand, within PFR28_04737 at 5393.144 kb on - strand, within PFR28_04737 at 5393.283 kb on + strand at 5393.284 kb on - strand at 5393.284 kb on - strand at 5393.284 kb on - strand at 5393.326 kb on + strand at 5393.327 kb on - strand at 5393.327 kb on - strand at 5393.327 kb on - strand at 5393.359 kb on + strand at 5393.360 kb on - strand at 5393.360 kb on - strand at 5393.360 kb on - strand at 5393.382 kb on + strand at 5393.383 kb on - strand at 5393.536 kb on + strand at 5393.536 kb on + strand at 5393.537 kb on - strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.611 kb on + strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.612 kb on - strand at 5393.634 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.639 kb on + strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.640 kb on - strand at 5393.649 kb on + strand at 5393.650 kb on - strand at 5393.650 kb on - strand at 5393.650 kb on - strand at 5393.890 kb on + strand, within PFR28_04738 at 5393.959 kb on - strand, within PFR28_04738 at 5394.151 kb on + strand, within PFR28_04738 at 5394.151 kb on + strand, within PFR28_04738 at 5394.247 kb on + strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.248 kb on - strand, within PFR28_04738 at 5394.250 kb on - strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738 at 5394.332 kb on + strand, within PFR28_04738
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 5,390,892 + PFR28_04735 0.89 -0.2 5,390,892 + PFR28_04735 0.89 +0.1 5,390,938 + +0.2 5,390,939 - +0.0 5,390,939 - -0.6 5,390,939 - +0.6 5,391,012 + +0.8 5,391,012 + +0.8 5,391,012 + -0.2 5,391,012 + -3.0 5,391,013 - +0.5 5,391,013 - -0.5 5,391,013 - -0.1 5,391,013 - -0.1 5,391,058 + -0.2 5,391,058 + +0.1 5,391,058 + -0.3 5,391,058 + +0.3 5,391,058 + +1.4 5,391,058 + -1.2 5,391,058 + -4.0 5,391,058 + -0.1 5,391,059 - -1.7 5,391,059 - +0.1 5,391,059 - +0.3 5,391,059 - -1.5 5,391,059 - -1.6 5,391,059 - +0.2 5,391,059 - -1.8 5,391,059 - +0.5 5,391,059 - +0.6 5,391,059 - +1.8 5,391,059 - -2.9 5,391,100 + PFR28_04736 0.11 -1.8 5,391,150 + PFR28_04736 0.18 -1.1 5,391,151 - PFR28_04736 0.18 -0.9 5,391,154 + PFR28_04736 0.19 +0.3 5,391,154 + PFR28_04736 0.19 -0.7 5,391,154 + PFR28_04736 0.19 +0.0 5,391,154 + PFR28_04736 0.19 -0.1 5,391,154 + PFR28_04736 0.19 -0.6 5,391,154 + PFR28_04736 0.19 +0.5 5,391,154 + PFR28_04736 0.19 -1.0 5,391,154 + PFR28_04736 0.19 -1.7 5,391,155 - PFR28_04736 0.19 -0.5 5,391,155 - PFR28_04736 0.19 +0.5 5,391,155 - PFR28_04736 0.19 -1.5 5,391,155 - PFR28_04736 0.19 -1.6 5,391,155 - PFR28_04736 0.19 -0.8 5,391,155 - PFR28_04736 0.19 -0.8 5,391,155 - PFR28_04736 0.19 -2.8 5,391,155 - PFR28_04736 0.19 +0.4 5,391,155 - PFR28_04736 0.19 +0.8 5,391,155 - PFR28_04736 0.19 +0.1 5,391,160 + PFR28_04736 0.20 -2.4 5,391,161 - PFR28_04736 0.20 -1.1 5,391,161 - PFR28_04736 0.20 -0.7 5,391,161 - PFR28_04736 0.20 -1.4 5,391,234 - PFR28_04736 0.30 -1.6 5,391,234 - PFR28_04736 0.30 +0.2 5,391,373 + PFR28_04736 0.50 -0.2 5,391,374 - PFR28_04736 0.50 +0.1 5,391,374 - PFR28_04736 0.50 +0.8 5,391,388 + PFR28_04736 0.52 +0.3 5,391,389 - PFR28_04736 0.52 +0.3 5,391,389 - PFR28_04736 0.52 +0.6 5,391,405 + PFR28_04736 0.55 -2.2 5,391,405 + PFR28_04736 0.55 +0.9 5,391,406 - PFR28_04736 0.55 -0.7 5,391,406 - PFR28_04736 0.55 -0.6 5,391,493 - PFR28_04736 0.67 +2.5 5,391,493 - PFR28_04736 0.67 -0.9 5,391,562 - PFR28_04736 0.77 -0.4 5,391,562 - PFR28_04736 0.77 +1.4 5,391,655 + -0.4 5,391,655 + +0.6 5,391,655 + -0.7 5,391,655 + +1.3 5,391,656 - -2.3 5,391,656 - +0.3 5,391,715 + -1.0 5,391,785 + -2.1 5,391,884 + +1.8 5,391,884 + +0.6 5,391,885 - +1.1 5,391,885 - -0.5 5,391,898 + -1.0 5,391,899 - +0.0 5,391,899 - -0.5 5,391,951 + -2.4 5,391,952 - -1.0 5,391,952 - +0.2 5,391,952 - -0.6 5,391,952 - -3.0 5,391,952 - -0.7 5,392,001 + -0.2 5,392,001 + -3.1 5,392,001 + -1.3 5,392,002 - -0.3 5,392,002 - +1.0 5,392,157 - PFR28_04737 0.18 -1.2 5,392,157 - PFR28_04737 0.18 -1.4 5,392,164 - PFR28_04737 0.19 -0.1 5,392,235 + PFR28_04737 0.24 -1.1 5,392,236 - PFR28_04737 0.24 -0.3 5,392,289 + PFR28_04737 0.27 -0.2 5,392,323 + PFR28_04737 0.29 -1.0 5,392,343 + PFR28_04737 0.31 +0.1 5,392,461 + PFR28_04737 0.39 +0.5 5,392,461 + PFR28_04737 0.39 -0.4 5,392,461 + PFR28_04737 0.39 -1.2 5,392,461 + PFR28_04737 0.39 -0.9 5,392,461 + PFR28_04737 0.39 -1.7 5,392,462 - PFR28_04737 0.39 -2.9 5,392,564 - PFR28_04737 0.45 -1.8 5,392,570 - PFR28_04737 0.46 -0.1 5,392,572 + PFR28_04737 0.46 -2.6 5,392,572 + PFR28_04737 0.46 -0.5 5,392,572 + PFR28_04737 0.46 -1.7 5,392,572 + PFR28_04737 0.46 +0.2 5,392,572 + PFR28_04737 0.46 -0.4 5,392,572 + PFR28_04737 0.46 -0.7 5,392,572 + PFR28_04737 0.46 -2.5 5,392,573 - PFR28_04737 0.46 +0.2 5,392,573 - PFR28_04737 0.46 -0.0 5,392,573 - PFR28_04737 0.46 -1.9 5,392,573 - PFR28_04737 0.46 -1.1 5,392,604 + PFR28_04737 0.48 -1.7 5,392,604 + PFR28_04737 0.48 -1.0 5,392,605 - PFR28_04737 0.48 -0.5 5,392,605 - PFR28_04737 0.48 +1.3 5,392,711 - PFR28_04737 0.55 -0.6 5,392,819 - PFR28_04737 0.62 +0.6 5,392,819 - PFR28_04737 0.62 +0.8 5,393,024 + PFR28_04737 0.76 -1.1 5,393,025 - PFR28_04737 0.76 -0.2 5,393,143 + PFR28_04737 0.84 -0.9 5,393,143 + PFR28_04737 0.84 +0.9 5,393,143 + PFR28_04737 0.84 -1.9 5,393,144 - PFR28_04737 0.84 -0.5 5,393,144 - PFR28_04737 0.84 +0.4 5,393,283 + +0.4 5,393,284 - +2.0 5,393,284 - -0.8 5,393,284 - +0.7 5,393,326 + +0.4 5,393,327 - -1.4 5,393,327 - -3.5 5,393,327 - -0.8 5,393,359 + +0.6 5,393,360 - -1.3 5,393,360 - -2.1 5,393,360 - -1.0 5,393,382 + -1.0 5,393,383 - +0.4 5,393,536 + -0.3 5,393,536 + -1.5 5,393,537 - -0.6 5,393,611 + +0.6 5,393,611 + +0.3 5,393,611 + +0.7 5,393,611 + +1.3 5,393,611 + +0.1 5,393,611 + -0.9 5,393,611 + +0.9 5,393,611 + -1.1 5,393,611 + +2.0 5,393,611 + +0.3 5,393,611 + -0.2 5,393,611 + +0.1 5,393,611 + +0.0 5,393,611 + +0.5 5,393,611 + +0.2 5,393,611 + +1.1 5,393,612 - -1.4 5,393,612 - +1.1 5,393,612 - -2.6 5,393,612 - +0.2 5,393,612 - -0.9 5,393,612 - -0.4 5,393,612 - -0.2 5,393,612 - -0.7 5,393,612 - -2.9 5,393,634 + +1.0 5,393,639 + -2.5 5,393,639 + -0.6 5,393,639 + -2.1 5,393,639 + -0.1 5,393,639 + -0.3 5,393,639 + +0.2 5,393,639 + +0.3 5,393,640 - +0.4 5,393,640 - +1.0 5,393,640 - +0.7 5,393,640 - -0.9 5,393,640 - -2.7 5,393,649 + +0.4 5,393,650 - +1.0 5,393,650 - +0.3 5,393,650 - +3.2 5,393,890 + PFR28_04738 0.11 +1.7 5,393,959 - PFR28_04738 0.13 -0.8 5,394,151 + PFR28_04738 0.21 -0.2 5,394,151 + PFR28_04738 0.21 +1.1 5,394,247 + PFR28_04738 0.25 +0.4 5,394,248 - PFR28_04738 0.25 +1.2 5,394,248 - PFR28_04738 0.25 -0.7 5,394,248 - PFR28_04738 0.25 +0.0 5,394,248 - PFR28_04738 0.25 -0.2 5,394,250 - PFR28_04738 0.25 -0.1 5,394,332 + PFR28_04738 0.28 -0.2 5,394,332 + PFR28_04738 0.28 +1.5 5,394,332 + PFR28_04738 0.28 -1.3
Or see this region's nucleotide sequence