Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04474 and PFR28_04475 are separated by 36 nucleotides PFR28_04475 and PFR28_04476 are separated by 273 nucleotides PFR28_04476 and PFR28_04477 overlap by 1 nucleotides PFR28_04477 and PFR28_04478 are separated by 83 nucleotides PFR28_04478 and PFR28_04479 are separated by 153 nucleotides
PFR28_04474: PFR28_04474 - Rubredoxin-NAD(+) reductase, at 5,099,609 to 5,100,757
_04474
PFR28_04475: PFR28_04475 - Rubredoxin-1, at 5,100,794 to 5,100,961
_04475
PFR28_04476: PFR28_04476 - Chorismate pyruvate-lyase, at 5,101,235 to 5,101,720
_04476
PFR28_04477: PFR28_04477 - 4-hydroxybenzoate octaprenyltransferase, at 5,101,720 to 5,102,610
_04477
PFR28_04478: PFR28_04478 - hypothetical protein, at 5,102,694 to 5,103,080
_04478
PFR28_04479: PFR28_04479 - Phosphate regulon transcriptional regulatory protein PhoB, at 5,103,234 to 5,103,923
_04479
Position (kb) 5101
5102
5103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5100.924 kb on + strand, within PFR28_04475 at 5100.924 kb on + strand, within PFR28_04475 at 5100.924 kb on + strand, within PFR28_04475 at 5100.924 kb on + strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.925 kb on - strand, within PFR28_04475 at 5100.943 kb on + strand, within PFR28_04475 at 5100.943 kb on + strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.944 kb on - strand, within PFR28_04475 at 5100.967 kb on + strand at 5100.967 kb on + strand at 5100.980 kb on - strand at 5101.041 kb on + strand at 5101.041 kb on + strand at 5101.119 kb on + strand at 5101.120 kb on - strand at 5101.120 kb on - strand at 5101.165 kb on + strand at 5101.183 kb on + strand at 5101.250 kb on + strand at 5101.250 kb on + strand at 5101.250 kb on + strand at 5101.250 kb on + strand at 5101.251 kb on - strand at 5101.403 kb on + strand, within PFR28_04476 at 5101.403 kb on + strand, within PFR28_04476 at 5101.403 kb on + strand, within PFR28_04476 at 5101.403 kb on + strand, within PFR28_04476 at 5101.403 kb on + strand, within PFR28_04476 at 5101.403 kb on + strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.404 kb on - strand, within PFR28_04476 at 5101.568 kb on + strand, within PFR28_04476 at 5101.569 kb on - strand, within PFR28_04476 at 5101.723 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.619 kb on + strand at 5102.620 kb on - strand at 5102.620 kb on - strand at 5102.620 kb on - strand at 5102.620 kb on - strand at 5102.626 kb on + strand at 5102.626 kb on + strand at 5102.626 kb on + strand at 5102.626 kb on + strand at 5102.626 kb on + strand at 5102.626 kb on + strand at 5102.627 kb on - strand at 5102.627 kb on - strand at 5102.629 kb on + strand at 5102.630 kb on - strand at 5102.657 kb on - strand at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.777 kb on + strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.778 kb on - strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.779 kb on + strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.780 kb on - strand, within PFR28_04478 at 5102.797 kb on + strand, within PFR28_04478 at 5102.797 kb on + strand, within PFR28_04478 at 5102.797 kb on + strand, within PFR28_04478 at 5102.797 kb on + strand, within PFR28_04478 at 5102.798 kb on - strand, within PFR28_04478 at 5102.798 kb on - strand, within PFR28_04478 at 5102.798 kb on - strand, within PFR28_04478 at 5102.798 kb on - strand, within PFR28_04478 at 5102.942 kb on + strand, within PFR28_04478 at 5102.942 kb on + strand, within PFR28_04478 at 5102.942 kb on + strand, within PFR28_04478 at 5102.942 kb on + strand, within PFR28_04478 at 5102.942 kb on + strand, within PFR28_04478 at 5102.943 kb on - strand, within PFR28_04478 at 5102.943 kb on - strand, within PFR28_04478 at 5102.943 kb on - strand, within PFR28_04478 at 5102.943 kb on - strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.944 kb on + strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5102.945 kb on - strand, within PFR28_04478 at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.070 kb on + strand at 5103.071 kb on - strand at 5103.071 kb on - strand at 5103.071 kb on - strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.073 kb on + strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.074 kb on - strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.180 kb on + strand at 5103.180 kb on + strand at 5103.181 kb on - strand at 5103.181 kb on - strand at 5103.193 kb on + strand at 5103.193 kb on + strand at 5103.193 kb on + strand at 5103.193 kb on + strand at 5103.193 kb on + strand at 5103.193 kb on + strand at 5103.194 kb on - strand at 5103.194 kb on - strand at 5103.194 kb on - strand at 5103.194 kb on - strand at 5103.212 kb on + strand at 5103.212 kb on + strand at 5103.212 kb on + strand at 5103.212 kb on + strand at 5103.212 kb on + strand at 5103.213 kb on - strand at 5103.213 kb on - strand at 5103.213 kb on - strand at 5103.316 kb on - strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.540 kb on + strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479 at 5103.541 kb on - strand, within PFR28_04479
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 5,100,924 + PFR28_04475 0.77 -1.9 5,100,924 + PFR28_04475 0.77 +1.1 5,100,924 + PFR28_04475 0.77 -0.4 5,100,924 + PFR28_04475 0.77 -1.1 5,100,925 - PFR28_04475 0.78 -2.3 5,100,925 - PFR28_04475 0.78 -0.3 5,100,925 - PFR28_04475 0.78 -0.8 5,100,925 - PFR28_04475 0.78 -0.4 5,100,925 - PFR28_04475 0.78 +0.5 5,100,925 - PFR28_04475 0.78 +0.9 5,100,925 - PFR28_04475 0.78 +1.5 5,100,925 - PFR28_04475 0.78 +1.3 5,100,925 - PFR28_04475 0.78 +0.2 5,100,925 - PFR28_04475 0.78 -0.9 5,100,943 + PFR28_04475 0.89 +1.3 5,100,943 + PFR28_04475 0.89 -0.2 5,100,944 - PFR28_04475 0.89 -1.8 5,100,944 - PFR28_04475 0.89 +0.1 5,100,944 - PFR28_04475 0.89 -0.2 5,100,944 - PFR28_04475 0.89 +1.1 5,100,944 - PFR28_04475 0.89 -0.2 5,100,944 - PFR28_04475 0.89 -0.4 5,100,967 + +0.6 5,100,967 + -0.4 5,100,980 - -0.2 5,101,041 + +0.5 5,101,041 + +0.2 5,101,119 + -1.2 5,101,120 - -1.3 5,101,120 - -0.6 5,101,165 + +0.3 5,101,183 + -0.1 5,101,250 + +0.2 5,101,250 + -0.4 5,101,250 + -0.2 5,101,250 + +1.0 5,101,251 - -0.3 5,101,403 + PFR28_04476 0.35 +1.8 5,101,403 + PFR28_04476 0.35 +0.7 5,101,403 + PFR28_04476 0.35 +0.3 5,101,403 + PFR28_04476 0.35 -0.0 5,101,403 + PFR28_04476 0.35 -0.3 5,101,403 + PFR28_04476 0.35 +0.3 5,101,404 - PFR28_04476 0.35 -1.4 5,101,404 - PFR28_04476 0.35 +0.5 5,101,404 - PFR28_04476 0.35 +0.3 5,101,404 - PFR28_04476 0.35 -0.4 5,101,404 - PFR28_04476 0.35 -0.6 5,101,404 - PFR28_04476 0.35 +0.1 5,101,568 + PFR28_04476 0.69 -0.9 5,101,569 - PFR28_04476 0.69 +0.1 5,101,723 + -1.6 5,102,619 + -0.1 5,102,619 + -1.1 5,102,619 + -0.0 5,102,619 + -0.6 5,102,619 + +1.1 5,102,619 + -0.4 5,102,619 + -1.1 5,102,620 - +0.1 5,102,620 - +0.6 5,102,620 - +0.5 5,102,620 - -2.1 5,102,626 + +1.8 5,102,626 + -0.4 5,102,626 + -0.7 5,102,626 + +0.5 5,102,626 + +0.4 5,102,626 + +0.2 5,102,627 - +0.8 5,102,627 - -1.1 5,102,629 + -1.7 5,102,630 - -0.4 5,102,657 - +0.6 5,102,777 + PFR28_04478 0.21 +0.8 5,102,777 + PFR28_04478 0.21 -1.1 5,102,777 + PFR28_04478 0.21 -2.9 5,102,777 + PFR28_04478 0.21 +1.5 5,102,777 + PFR28_04478 0.21 +0.3 5,102,777 + PFR28_04478 0.21 -0.2 5,102,777 + PFR28_04478 0.21 +0.8 5,102,777 + PFR28_04478 0.21 -0.2 5,102,777 + PFR28_04478 0.21 +0.4 5,102,778 - PFR28_04478 0.22 +0.4 5,102,778 - PFR28_04478 0.22 -0.7 5,102,778 - PFR28_04478 0.22 +0.6 5,102,778 - PFR28_04478 0.22 +0.2 5,102,778 - PFR28_04478 0.22 -0.2 5,102,778 - PFR28_04478 0.22 -1.3 5,102,778 - PFR28_04478 0.22 +0.7 5,102,778 - PFR28_04478 0.22 -1.7 5,102,778 - PFR28_04478 0.22 +1.8 5,102,778 - PFR28_04478 0.22 -0.3 5,102,779 + PFR28_04478 0.22 +0.6 5,102,779 + PFR28_04478 0.22 -0.9 5,102,779 + PFR28_04478 0.22 -1.3 5,102,779 + PFR28_04478 0.22 -1.7 5,102,779 + PFR28_04478 0.22 -1.6 5,102,779 + PFR28_04478 0.22 +0.3 5,102,779 + PFR28_04478 0.22 -0.3 5,102,780 - PFR28_04478 0.22 -0.8 5,102,780 - PFR28_04478 0.22 +0.7 5,102,780 - PFR28_04478 0.22 +0.4 5,102,780 - PFR28_04478 0.22 -0.8 5,102,780 - PFR28_04478 0.22 -1.0 5,102,780 - PFR28_04478 0.22 +0.7 5,102,780 - PFR28_04478 0.22 +0.1 5,102,780 - PFR28_04478 0.22 -1.7 5,102,797 + PFR28_04478 0.27 -0.9 5,102,797 + PFR28_04478 0.27 +0.1 5,102,797 + PFR28_04478 0.27 -0.6 5,102,797 + PFR28_04478 0.27 -0.6 5,102,798 - PFR28_04478 0.27 -0.1 5,102,798 - PFR28_04478 0.27 +0.2 5,102,798 - PFR28_04478 0.27 -1.6 5,102,798 - PFR28_04478 0.27 +0.5 5,102,942 + PFR28_04478 0.64 -1.0 5,102,942 + PFR28_04478 0.64 +1.2 5,102,942 + PFR28_04478 0.64 +0.4 5,102,942 + PFR28_04478 0.64 -1.0 5,102,942 + PFR28_04478 0.64 -0.7 5,102,943 - PFR28_04478 0.64 -2.6 5,102,943 - PFR28_04478 0.64 -0.7 5,102,943 - PFR28_04478 0.64 -2.1 5,102,943 - PFR28_04478 0.64 +2.0 5,102,944 + PFR28_04478 0.65 +0.2 5,102,944 + PFR28_04478 0.65 +1.8 5,102,944 + PFR28_04478 0.65 -0.2 5,102,944 + PFR28_04478 0.65 -0.0 5,102,944 + PFR28_04478 0.65 +0.3 5,102,944 + PFR28_04478 0.65 -1.0 5,102,944 + PFR28_04478 0.65 +0.6 5,102,944 + PFR28_04478 0.65 -0.5 5,102,944 + PFR28_04478 0.65 +0.2 5,102,944 + PFR28_04478 0.65 -0.9 5,102,944 + PFR28_04478 0.65 -0.1 5,102,944 + PFR28_04478 0.65 +0.9 5,102,944 + PFR28_04478 0.65 -1.7 5,102,945 - PFR28_04478 0.65 -3.0 5,102,945 - PFR28_04478 0.65 +1.3 5,102,945 - PFR28_04478 0.65 +1.2 5,102,945 - PFR28_04478 0.65 +1.1 5,102,945 - PFR28_04478 0.65 -0.6 5,102,945 - PFR28_04478 0.65 +1.8 5,102,945 - PFR28_04478 0.65 -0.5 5,102,945 - PFR28_04478 0.65 -0.4 5,102,945 - PFR28_04478 0.65 -2.6 5,102,945 - PFR28_04478 0.65 +0.7 5,102,945 - PFR28_04478 0.65 -0.7 5,102,945 - PFR28_04478 0.65 -0.3 5,103,070 + +0.3 5,103,070 + -0.9 5,103,070 + +0.5 5,103,070 + +0.6 5,103,070 + -0.7 5,103,070 + -1.2 5,103,070 + +0.8 5,103,070 + +1.9 5,103,071 - +0.6 5,103,071 - +0.4 5,103,071 - -1.4 5,103,073 + -0.6 5,103,073 + -0.7 5,103,073 + -1.4 5,103,073 + -0.4 5,103,073 + -0.5 5,103,073 + +0.9 5,103,073 + +0.1 5,103,073 + -1.2 5,103,073 + +0.5 5,103,074 - +0.3 5,103,074 - +0.4 5,103,074 - -0.2 5,103,074 - -1.1 5,103,074 - +0.4 5,103,074 - +0.4 5,103,074 - +1.1 5,103,074 - +0.3 5,103,160 + -0.1 5,103,160 + +0.6 5,103,160 + -0.0 5,103,160 + +0.8 5,103,161 - -1.1 5,103,161 - +0.7 5,103,161 - -0.5 5,103,161 - -1.8 5,103,161 - +0.4 5,103,180 + +0.5 5,103,180 + -0.7 5,103,181 - -0.7 5,103,181 - -2.1 5,103,193 + -2.8 5,103,193 + -2.8 5,103,193 + +0.9 5,103,193 + -0.6 5,103,193 + -0.2 5,103,193 + +0.1 5,103,194 - -0.8 5,103,194 - +0.0 5,103,194 - -0.0 5,103,194 - -1.1 5,103,212 + -1.4 5,103,212 + +0.7 5,103,212 + -0.2 5,103,212 + -0.2 5,103,212 + -0.1 5,103,213 - -0.1 5,103,213 - +0.4 5,103,213 - -1.4 5,103,316 - PFR28_04479 0.12 +0.5 5,103,540 + PFR28_04479 0.44 +0.1 5,103,540 + PFR28_04479 0.44 -1.2 5,103,540 + PFR28_04479 0.44 +0.6 5,103,540 + PFR28_04479 0.44 +1.0 5,103,540 + PFR28_04479 0.44 +0.1 5,103,540 + PFR28_04479 0.44 +0.8 5,103,540 + PFR28_04479 0.44 +0.4 5,103,540 + PFR28_04479 0.44 -0.0 5,103,540 + PFR28_04479 0.44 +0.2 5,103,540 + PFR28_04479 0.44 +1.5 5,103,540 + PFR28_04479 0.44 +0.6 5,103,540 + PFR28_04479 0.44 -0.5 5,103,540 + PFR28_04479 0.44 +0.1 5,103,541 - PFR28_04479 0.44 -0.0 5,103,541 - PFR28_04479 0.44 +0.7 5,103,541 - PFR28_04479 0.44 +0.6 5,103,541 - PFR28_04479 0.44 -0.4 5,103,541 - PFR28_04479 0.44 +1.1 5,103,541 - PFR28_04479 0.44 +0.3 5,103,541 - PFR28_04479 0.44 -2.0 5,103,541 - PFR28_04479 0.44 +0.8 5,103,541 - PFR28_04479 0.44 +0.1
Or see this region's nucleotide sequence