Strain Fitness in Pseudomonas sp. RS175 around PFR28_04461

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
5,077,901	-				+0.5
5,077,901	-				+1.8
5,077,901	-				-0.6
5,077,901	-				+0.5
5,077,964	+				-1.9
5,077,964	+				-0.6
5,077,965	-				+3.3
5,077,974	+				-1.7
5,078,091	+		PFR28_04459	0.24	-1.2
5,078,137	+		PFR28_04459	0.34	+0.8
5,078,137	+		PFR28_04459	0.34	+0.0
5,078,137	+		PFR28_04459	0.34	-0.2
5,078,137	+		PFR28_04459	0.34	-0.5
5,078,137	+		PFR28_04459	0.34	+0.8
5,078,137	+		PFR28_04459	0.34	+0.2
5,078,138	-		PFR28_04459	0.34	-0.8
5,078,138	-		PFR28_04459	0.34	+0.2
5,078,138	-		PFR28_04459	0.34	-0.7
5,078,138	-		PFR28_04459	0.34	+2.3
5,078,138	-		PFR28_04459	0.34	+1.8
5,078,138	-		PFR28_04459	0.34	-0.2
5,078,139	+		PFR28_04459	0.34	+0.0
5,078,139	+		PFR28_04459	0.34	+0.8
5,078,139	+		PFR28_04459	0.34	-1.0
5,078,236	+		PFR28_04459	0.56	+0.5
5,078,236	+		PFR28_04459	0.56	+0.9
5,078,237	-		PFR28_04459	0.56	-0.5
5,078,237	-		PFR28_04459	0.56	-0.9
5,078,237	-		PFR28_04459	0.56	-0.1
5,078,237	-		PFR28_04459	0.56	-0.6
5,078,237	-		PFR28_04459	0.56	-0.1
5,078,245	-		PFR28_04459	0.58	+0.2
5,078,245	-		PFR28_04459	0.58	-0.2
5,078,245	-		PFR28_04459	0.58	-0.5
5,078,259	+		PFR28_04459	0.61	+0.4
5,078,259	+		PFR28_04459	0.61	+0.5
5,078,259	+		PFR28_04459	0.61	+0.9
5,078,259	+		PFR28_04459	0.61	+0.6
5,078,260	-		PFR28_04459	0.61	-1.0
5,078,260	-		PFR28_04459	0.61	-0.1
5,078,260	-		PFR28_04459	0.61	+0.7
5,078,305	+		PFR28_04459	0.71	+0.3
5,078,306	-		PFR28_04459	0.72	+0.5
5,078,306	-		PFR28_04459	0.72	+0.1
5,078,337	+		PFR28_04459	0.78	-2.3
5,078,337	+		PFR28_04459	0.78	+0.8
5,078,427	+				+0.3
5,078,427	+				-2.7
5,078,427	+				+1.3
5,078,427	+				+0.3
5,078,427	+				+2.6
5,078,427	+				-0.9
5,078,428	-				-1.8
5,078,428	-				+0.2
5,078,428	-				+1.3
5,078,428	-				+0.3
5,078,720	+		PFR28_04460	0.66	+0.2
5,078,720	+		PFR28_04460	0.66	+0.4
5,078,720	+		PFR28_04460	0.66	-0.0
5,078,720	+		PFR28_04460	0.66	+0.7
5,078,721	-		PFR28_04460	0.66	-0.7
5,078,721	-		PFR28_04460	0.66	+0.2
5,078,721	-		PFR28_04460	0.66	+0.7
5,078,721	-		PFR28_04460	0.66	+1.5
5,078,721	-		PFR28_04460	0.66	+0.2
5,078,847	+				-0.3
5,078,848	-				+0.3
5,078,861	+				+0.3
5,078,861	+				+1.1
5,078,862	-				+1.6
5,079,062	-		PFR28_04461	0.39	-1.9
5,079,062	-		PFR28_04461	0.39	-0.6
5,079,263	+		PFR28_04461	0.78	+0.8
5,079,339	+				+0.1
5,079,339	+				+0.1
5,079,339	+				-1.4
5,079,339	+				+2.1
5,079,339	+				-0.4
5,079,340	-				+3.8
5,079,340	-				+0.1
5,079,340	-				-0.1
5,079,340	-				-0.5
5,079,340	-				-0.7
5,079,340	-				-1.7
5,079,397	+				-0.2
5,079,397	+				-1.2
5,079,397	+				-0.5
5,079,398	-				-2.8
5,079,398	-				+1.3
5,079,398	-				-0.7
5,079,398	-				+2.1
5,079,505	+				+1.1
5,079,505	+				-1.1
5,079,505	+				-2.6
5,079,506	-				-0.2
5,079,506	-				-1.0
5,079,506	-				-1.3
5,079,536	-				+0.7
5,079,619	+		PFR28_04462	0.13	-1.3
5,079,950	-		PFR28_04462	0.31	+0.5
5,079,950	-		PFR28_04462	0.31	-0.4
5,079,950	-		PFR28_04462	0.31	+1.8
5,079,985	+		PFR28_04462	0.33	+0.0
5,080,153	+		PFR28_04462	0.42	+1.3
5,080,153	+		PFR28_04462	0.42	+0.4
5,080,153	+		PFR28_04462	0.42	-1.1
5,080,153	+		PFR28_04462	0.42	+0.1
5,080,154	-		PFR28_04462	0.42	-0.6
5,080,154	-		PFR28_04462	0.42	-4.1
5,080,154	-		PFR28_04462	0.42	+0.5