Strain Fitness in Pseudomonas sp. RS175 around PFR28_04044

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04042 and PFR28_04043 are separated by 4 nucleotidesPFR28_04043 and PFR28_04044 overlap by 4 nucleotidesPFR28_04044 and PFR28_04045 are separated by 9 nucleotides PFR28_04042: PFR28_04042 - hypothetical protein, at 4,615,198 to 4,615,893 _04042 PFR28_04043: PFR28_04043 - Indole-3-glycerol phosphate synthase, at 4,615,898 to 4,616,734 _04043 PFR28_04044: PFR28_04044 - Anthranilate phosphoribosyltransferase, at 4,616,731 to 4,617,780 _04044 PFR28_04045: PFR28_04045 - Anthranilate synthase component 2, at 4,617,790 to 4,618,383 _04045 Position (kb) 4616 4617 4618Strain fitness (log2 ratio) -2 -1 0 1 2at 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.764 kb on - strandat 4616.764 kb on - strandat 4616.764 kb on - strandat 4618.499 kb on - strandat 4618.499 kb on - strandat 4618.516 kb on - strandat 4618.543 kb on - strandat 4618.543 kb on - strandat 4618.632 kb on - strandat 4618.632 kb on - strandat 4618.647 kb on - strandat 4618.647 kb on - strandat 4618.652 kb on - strandat 4618.652 kb on - strandat 4618.671 kb on + strandat 4618.671 kb on + strandat 4618.671 kb on + strandat 4618.671 kb on + strandat 4618.672 kb on - strandat 4618.672 kb on - strandat 4618.672 kb on - strandat 4618.672 kb on - strandat 4618.672 kb on - strandat 4618.771 kb on + strandat 4618.771 kb on + strandat 4618.772 kb on - strandat 4618.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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4,616,756 - -0.7
4,616,756 - -1.0
4,616,756 - +0.9
4,616,756 - -2.2
4,616,764 - +0.7
4,616,764 - -0.9
4,616,764 - -0.4
4,618,499 - -1.6
4,618,499 - -0.5
4,618,516 - +0.9
4,618,543 - -1.0
4,618,543 - +1.1
4,618,632 - -1.5
4,618,632 - +0.2
4,618,647 - +1.3
4,618,647 - +0.1
4,618,652 - -1.7
4,618,652 - +2.6
4,618,671 + +0.6
4,618,671 + +0.3
4,618,671 + +0.0
4,618,671 + -0.1
4,618,672 - -0.3
4,618,672 - +0.7
4,618,672 - +0.2
4,618,672 - -0.9
4,618,672 - +0.7
4,618,771 + +0.6
4,618,771 + +0.4
4,618,772 - +0.4
4,618,772 - -0.3

Or see this region's nucleotide sequence