Strain Fitness in Pseudomonas sp. RS175 around PFR28_04043

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04041 and PFR28_04042 overlap by 4 nucleotidesPFR28_04042 and PFR28_04043 are separated by 4 nucleotidesPFR28_04043 and PFR28_04044 overlap by 4 nucleotides PFR28_04041: PFR28_04041 - Cyclic AMP receptor-like protein, at 4,614,557 to 4,615,201 _04041 PFR28_04042: PFR28_04042 - hypothetical protein, at 4,615,198 to 4,615,893 _04042 PFR28_04043: PFR28_04043 - Indole-3-glycerol phosphate synthase, at 4,615,898 to 4,616,734 _04043 PFR28_04044: PFR28_04044 - Anthranilate phosphoribosyltransferase, at 4,616,731 to 4,617,780 _04044 Position (kb) 4615 4616 4617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4614.911 kb on + strand, within PFR28_04041at 4614.911 kb on + strand, within PFR28_04041at 4614.911 kb on + strand, within PFR28_04041at 4614.912 kb on - strand, within PFR28_04041at 4614.912 kb on - strand, within PFR28_04041at 4614.912 kb on - strand, within PFR28_04041at 4614.912 kb on - strand, within PFR28_04041at 4614.950 kb on - strand, within PFR28_04041at 4615.065 kb on + strand, within PFR28_04041at 4615.065 kb on + strand, within PFR28_04041at 4615.066 kb on - strand, within PFR28_04041at 4615.066 kb on - strand, within PFR28_04041at 4615.072 kb on - strand, within PFR28_04041at 4615.098 kb on + strand, within PFR28_04041at 4615.199 kb on + strandat 4615.199 kb on + strandat 4615.200 kb on - strandat 4615.375 kb on + strand, within PFR28_04042at 4615.390 kb on + strand, within PFR28_04042at 4615.390 kb on + strand, within PFR28_04042at 4615.391 kb on - strand, within PFR28_04042at 4615.513 kb on + strand, within PFR28_04042at 4615.608 kb on + strand, within PFR28_04042at 4615.608 kb on + strand, within PFR28_04042at 4615.608 kb on + strand, within PFR28_04042at 4615.622 kb on + strand, within PFR28_04042at 4615.622 kb on + strand, within PFR28_04042at 4615.622 kb on + strand, within PFR28_04042at 4615.622 kb on + strand, within PFR28_04042at 4615.622 kb on + strand, within PFR28_04042at 4615.623 kb on - strand, within PFR28_04042at 4615.623 kb on - strand, within PFR28_04042at 4615.635 kb on + strand, within PFR28_04042at 4615.635 kb on + strand, within PFR28_04042at 4615.636 kb on - strand, within PFR28_04042at 4615.727 kb on + strand, within PFR28_04042at 4615.727 kb on + strand, within PFR28_04042at 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.756 kb on - strandat 4616.764 kb on - strandat 4616.764 kb on - strandat 4616.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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4,614,911 + PFR28_04041 0.55 -1.1
4,614,911 + PFR28_04041 0.55 -1.3
4,614,911 + PFR28_04041 0.55 -0.3
4,614,912 - PFR28_04041 0.55 +0.7
4,614,912 - PFR28_04041 0.55 -1.1
4,614,912 - PFR28_04041 0.55 -0.3
4,614,912 - PFR28_04041 0.55 -0.9
4,614,950 - PFR28_04041 0.61 -3.5
4,615,065 + PFR28_04041 0.79 -1.0
4,615,065 + PFR28_04041 0.79 +0.3
4,615,066 - PFR28_04041 0.79 -0.4
4,615,066 - PFR28_04041 0.79 +1.0
4,615,072 - PFR28_04041 0.80 -0.0
4,615,098 + PFR28_04041 0.84 -2.5
4,615,199 + -1.5
4,615,199 + +0.8
4,615,200 - +1.1
4,615,375 + PFR28_04042 0.25 +2.3
4,615,390 + PFR28_04042 0.28 +0.2
4,615,390 + PFR28_04042 0.28 +0.5
4,615,391 - PFR28_04042 0.28 -1.6
4,615,513 + PFR28_04042 0.45 -1.2
4,615,608 + PFR28_04042 0.59 -0.6
4,615,608 + PFR28_04042 0.59 +0.5
4,615,608 + PFR28_04042 0.59 -0.5
4,615,622 + PFR28_04042 0.61 +0.6
4,615,622 + PFR28_04042 0.61 +0.4
4,615,622 + PFR28_04042 0.61 -0.4
4,615,622 + PFR28_04042 0.61 +0.1
4,615,622 + PFR28_04042 0.61 +0.3
4,615,623 - PFR28_04042 0.61 -0.2
4,615,623 - PFR28_04042 0.61 -1.7
4,615,635 + PFR28_04042 0.63 -2.3
4,615,635 + PFR28_04042 0.63 -0.8
4,615,636 - PFR28_04042 0.63 +0.1
4,615,727 + PFR28_04042 0.76 -0.5
4,615,727 + PFR28_04042 0.76 -1.2
4,616,756 - -0.7
4,616,756 - -1.0
4,616,756 - +0.9
4,616,756 - -2.2
4,616,764 - +0.7
4,616,764 - -0.9
4,616,764 - -0.4

Or see this region's nucleotide sequence