Strain Fitness in Pseudomonas sp. RS175 around PFR28_03383

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
3,889,811	+				-1.9
3,889,811	+				+0.1
3,889,812	-				-0.2
3,889,812	-				-0.1
3,889,812	-				+0.7
3,889,820	+				-0.7
3,889,820	+				-0.8
3,889,821	-				-0.9
3,889,821	-				-0.5
3,889,821	-				-0.2
3,889,821	-				-0.1
3,889,821	-				+0.8
3,889,821	-				-0.5
3,889,821	-				-1.7
3,889,892	+				-1.1
3,889,893	-				+0.9
3,889,914	-				-0.5
3,889,914	-				+0.3
3,890,190	-				-0.5
3,890,445	-		PFR28_03382	0.16	+0.7
3,890,520	+		PFR28_03382	0.36	-0.9
3,890,520	+		PFR28_03382	0.36	-0.1
3,890,520	+		PFR28_03382	0.36	-0.6
3,890,521	-		PFR28_03382	0.36	-0.3
3,890,521	-		PFR28_03382	0.36	+0.5
3,890,577	+		PFR28_03382	0.51	-2.1
3,890,577	+		PFR28_03382	0.51	-0.8
3,890,577	+		PFR28_03382	0.51	-1.8
3,890,577	+		PFR28_03382	0.51	+1.5
3,890,577	+		PFR28_03382	0.51	+1.2
3,890,577	+		PFR28_03382	0.51	-0.7
3,890,577	+		PFR28_03382	0.51	+0.9
3,890,577	+		PFR28_03382	0.51	-0.4
3,890,577	+		PFR28_03382	0.51	-0.5
3,890,577	+		PFR28_03382	0.51	+0.6
3,890,577	+		PFR28_03382	0.51	-0.1
3,890,577	+		PFR28_03382	0.51	+1.3
3,890,577	+		PFR28_03382	0.51	-1.0
3,890,577	+		PFR28_03382	0.51	-0.1
3,890,577	+		PFR28_03382	0.51	+0.4
3,890,577	+		PFR28_03382	0.51	-0.3
3,890,578	-		PFR28_03382	0.51	+1.6
3,890,578	-		PFR28_03382	0.51	+0.1
3,890,578	-		PFR28_03382	0.51	-0.8
3,890,578	-		PFR28_03382	0.51	-2.5
3,890,578	-		PFR28_03382	0.51	+1.1
3,890,578	-		PFR28_03382	0.51	-0.0
3,890,578	-		PFR28_03382	0.51	-0.9
3,890,578	-		PFR28_03382	0.51	+1.2
3,890,578	-		PFR28_03382	0.51	-0.1
3,890,578	-		PFR28_03382	0.51	-0.0
3,890,578	-		PFR28_03382	0.51	+0.8
3,890,578	-		PFR28_03382	0.51	+0.8
3,890,578	-		PFR28_03382	0.51	-3.2
3,890,578	-		PFR28_03382	0.51	-0.0
3,890,578	-		PFR28_03382	0.51	+0.8
3,890,578	-		PFR28_03382	0.51	-0.9
3,890,681	+		PFR28_03382	0.78	-0.9
3,890,681	+		PFR28_03382	0.78	-0.4
3,890,708	+		PFR28_03382	0.85	-0.2
3,890,708	+		PFR28_03382	0.85	+0.4
3,890,709	-		PFR28_03382	0.85	+0.0
3,890,730	+				-0.1
3,891,017	+				+0.1
3,891,017	+				-1.6
3,891,017	+				+0.4
3,891,017	+				-0.6
3,891,017	+				-2.3
3,891,017	+				+0.1
3,891,018	-				-0.2
3,891,018	-				-2.7
3,891,018	-				-0.6
3,891,018	-				-2.6
3,891,018	-				-0.3
3,891,018	-				-0.2
3,891,032	+				+0.4
3,891,033	-				-3.6
3,891,035	+				+0.3
3,891,035	+				-0.6
3,891,035	+				-1.2
3,891,035	+				+0.5
3,891,035	+				-2.6
3,891,035	+				+0.7
3,891,035	+				+0.4
3,891,035	+				-0.1
3,891,035	+				-1.7
3,891,036	-				-0.3
3,891,036	-				-0.1
3,891,036	-				-0.5
3,891,036	-				-3.2
3,891,036	-				-0.1
3,891,036	-				+0.2
3,891,036	-				-3.2
3,891,036	-				-0.9
3,891,092	+		PFR28_03383	0.11	-2.4
3,891,092	+		PFR28_03383	0.11	-1.8
3,891,093	-		PFR28_03383	0.11	-0.0
3,891,101	+		PFR28_03383	0.11	-0.6
3,891,101	+		PFR28_03383	0.11	+0.7
3,891,102	-		PFR28_03383	0.11	-1.6
3,891,102	-		PFR28_03383	0.11	-0.2
3,891,102	-		PFR28_03383	0.11	+0.1
3,891,332	-		PFR28_03383	0.19	-1.7
3,891,367	-		PFR28_03383	0.21	+0.6
3,891,623	+		PFR28_03383	0.30	-1.1
3,891,623	+		PFR28_03383	0.30	+2.6
3,891,624	-		PFR28_03383	0.30	-0.4
3,891,739	+		PFR28_03383	0.34	-0.7
3,891,739	+		PFR28_03383	0.34	-1.5
3,891,740	-		PFR28_03383	0.34	-1.5
3,891,809	+		PFR28_03383	0.36	-1.1
3,891,809	+		PFR28_03383	0.36	-2.6
3,891,809	+		PFR28_03383	0.36	+1.6
3,891,809	+		PFR28_03383	0.36	-1.1
3,891,809	+		PFR28_03383	0.36	-1.9
3,891,809	+		PFR28_03383	0.36	+0.0
3,891,810	-		PFR28_03383	0.36	-0.2
3,891,810	-		PFR28_03383	0.36	-0.1
3,891,819	-		PFR28_03383	0.37	-1.5
3,891,819	-		PFR28_03383	0.37	+1.0
3,892,148	-		PFR28_03383	0.48	-1.2
3,892,233	-		PFR28_03383	0.51	-1.4
3,892,233	-		PFR28_03383	0.51	-0.3
3,892,490	+		PFR28_03383	0.60	-0.8
3,892,490	+		PFR28_03383	0.60	-0.1
3,892,490	+		PFR28_03383	0.60	-0.4
3,892,491	-		PFR28_03383	0.60	+0.5
3,892,491	-		PFR28_03383	0.60	+0.0
3,892,491	-		PFR28_03383	0.60	-0.4
3,892,491	-		PFR28_03383	0.60	-1.4
3,892,517	+		PFR28_03383	0.61	-1.1
3,892,517	+		PFR28_03383	0.61	-0.4
3,892,518	-		PFR28_03383	0.61	+0.3
3,892,718	+		PFR28_03383	0.68	-1.0
3,892,719	-		PFR28_03383	0.68	-0.6
3,892,794	+		PFR28_03383	0.71	-0.2
3,892,794	+		PFR28_03383	0.71	-0.6
3,892,794	+		PFR28_03383	0.71	-2.0
3,892,794	+		PFR28_03383	0.71	-2.7
3,892,794	+		PFR28_03383	0.71	-0.6
3,892,794	+		PFR28_03383	0.71	-1.0
3,892,794	+		PFR28_03383	0.71	-1.9
3,892,795	-		PFR28_03383	0.71	-1.9
3,892,795	-		PFR28_03383	0.71	-1.1
3,892,795	-		PFR28_03383	0.71	-1.8
3,892,795	-		PFR28_03383	0.71	+0.0
3,892,795	-		PFR28_03383	0.71	-0.7
3,892,795	-		PFR28_03383	0.71	-0.7
3,892,795	-		PFR28_03383	0.71	-0.5
3,892,796	+		PFR28_03383	0.71	-2.1
3,892,796	+		PFR28_03383	0.71	-0.4
3,892,796	+		PFR28_03383	0.71	-0.4
3,892,796	+		PFR28_03383	0.71	-2.3
3,892,796	+		PFR28_03383	0.71	-1.5
3,892,796	+		PFR28_03383	0.71	-3.8
3,892,796	+		PFR28_03383	0.71	-0.8
3,892,796	+		PFR28_03383	0.71	-0.2
3,892,796	+		PFR28_03383	0.71	-0.7
3,892,797	-		PFR28_03383	0.71	+0.1
3,892,797	-		PFR28_03383	0.71	-0.4
3,892,797	-		PFR28_03383	0.71	+0.4
3,892,797	-		PFR28_03383	0.71	-3.0
3,892,797	-		PFR28_03383	0.71	+0.5
3,892,797	-		PFR28_03383	0.71	-0.9
3,892,797	-		PFR28_03383	0.71	-2.4
3,892,797	-		PFR28_03383	0.71	+0.2
3,892,797	-		PFR28_03383	0.71	-0.8
3,892,797	-		PFR28_03383	0.71	-2.9
3,892,797	-		PFR28_03383	0.71	-2.1
3,892,797	-		PFR28_03383	0.71	-1.0
3,892,797	-		PFR28_03383	0.71	-3.0
3,892,797	-		PFR28_03383	0.71	-1.5
3,892,797	-		PFR28_03383	0.71	-0.5
3,892,797	-		PFR28_03383	0.71	-1.7
3,893,051	+		PFR28_03383	0.80	-1.2
3,893,051	+		PFR28_03383	0.80	-3.1
3,893,051	+		PFR28_03383	0.80	-0.9
3,893,051	+		PFR28_03383	0.80	-1.8
3,893,051	+		PFR28_03383	0.80	-1.7
3,893,051	+		PFR28_03383	0.80	-3.4
3,893,051	+		PFR28_03383	0.80	-0.2
3,893,051	+		PFR28_03383	0.80	-0.5
3,893,051	+		PFR28_03383	0.80	-1.1
3,893,052	-		PFR28_03383	0.80	-1.0
3,893,052	-		PFR28_03383	0.80	+0.8
3,893,052	-		PFR28_03383	0.80	-0.1
3,893,052	-		PFR28_03383	0.80	+0.2
3,893,052	-		PFR28_03383	0.80	-1.1
3,893,052	-		PFR28_03383	0.80	-0.6
3,893,052	-		PFR28_03383	0.80	-2.3
3,893,117	+		PFR28_03383	0.82	-2.3
3,893,117	+		PFR28_03383	0.82	+0.7
3,893,117	+		PFR28_03383	0.82	-1.0
3,893,117	+		PFR28_03383	0.82	-0.8
3,893,117	+		PFR28_03383	0.82	-0.8
3,893,117	+		PFR28_03383	0.82	+0.3
3,893,117	+		PFR28_03383	0.82	-0.9
3,893,118	-		PFR28_03383	0.82	-2.3
3,893,118	-		PFR28_03383	0.82	-0.8
3,893,118	-		PFR28_03383	0.82	-1.4
3,893,118	-		PFR28_03383	0.82	+1.9
3,893,118	-		PFR28_03383	0.82	-1.1
3,893,144	+		PFR28_03383	0.83	-0.3
3,893,489	+				-1.8
3,893,540	+				-1.4
3,893,540	+				-3.1
3,893,541	-				-0.1
3,893,541	-				+0.2
3,893,553	+				+1.6
3,893,618	+				-2.7
3,893,618	+				+0.5
3,893,618	+				-2.5
3,893,618	+				-0.2
3,893,619	-				-1.1
3,893,619	-				-2.0
3,893,619	-				-1.7
3,893,619	-				-0.5
3,893,761	+				-0.5
3,893,857	-				+0.1
3,893,857	-				+0.1
3,893,857	-				+0.0
3,893,950	+		PFR28_03384	0.11	+0.2
3,893,951	-		PFR28_03384	0.11	+0.5
3,894,230	-		PFR28_03384	0.31	-0.5
3,894,230	-		PFR28_03384	0.31	+0.2
3,894,230	-		PFR28_03384	0.31	+0.8
3,894,230	-		PFR28_03384	0.31	-2.3
3,894,230	-		PFR28_03384	0.31	-2.1
3,894,358	+		PFR28_03384	0.41	+0.7
3,894,358	+		PFR28_03384	0.41	+1.0
3,894,358	+		PFR28_03384	0.41	+0.5
3,894,358	+		PFR28_03384	0.41	-0.9
3,894,358	+		PFR28_03384	0.41	-0.2
3,894,358	+		PFR28_03384	0.41	+1.0
3,894,358	+		PFR28_03384	0.41	+1.3
3,894,359	-		PFR28_03384	0.41	+0.2
3,894,359	-		PFR28_03384	0.41	+0.2
3,894,359	-		PFR28_03384	0.41	-2.7
3,894,359	-		PFR28_03384	0.41	+1.5
3,894,359	-		PFR28_03384	0.41	-1.5
3,894,359	-		PFR28_03384	0.41	-0.8
3,894,610	+		PFR28_03384	0.59	-0.4
3,894,611	-		PFR28_03384	0.59	+0.5
3,894,611	-		PFR28_03384	0.59	+0.1
3,894,611	-		PFR28_03384	0.59	-2.3