Strain Fitness in Pseudomonas sp. RS175 around PFR28_03085

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
3,586,323	+		PFR28_03084	0.13	+0.3
3,586,323	+		PFR28_03084	0.13	-0.5
3,586,323	+		PFR28_03084	0.13	+0.5
3,586,323	+		PFR28_03084	0.13	+0.6
3,586,323	+		PFR28_03084	0.13	-0.3
3,586,324	-		PFR28_03084	0.14	+1.4
3,586,324	-		PFR28_03084	0.14	+0.7
3,586,324	-		PFR28_03084	0.14	+0.2
3,586,324	-		PFR28_03084	0.14	+1.8
3,586,324	-		PFR28_03084	0.14	+1.1
3,586,324	-		PFR28_03084	0.14	+2.2
3,586,324	-		PFR28_03084	0.14	-0.8
3,586,324	-		PFR28_03084	0.14	-1.3
3,586,324	-		PFR28_03084	0.14	-0.5
3,586,339	+		PFR28_03084	0.15	+0.8
3,586,340	-		PFR28_03084	0.15	+1.0
3,586,402	+		PFR28_03084	0.23	+0.0
3,586,402	+		PFR28_03084	0.23	-0.8
3,586,402	+		PFR28_03084	0.23	+0.5
3,586,402	+		PFR28_03084	0.23	-0.3
3,586,402	+		PFR28_03084	0.23	-0.1
3,586,402	+		PFR28_03084	0.23	+0.0
3,586,402	+		PFR28_03084	0.23	+1.3
3,586,403	-		PFR28_03084	0.23	-0.3
3,586,403	-		PFR28_03084	0.23	+1.7
3,586,403	-		PFR28_03084	0.23	-0.1
3,586,403	-		PFR28_03084	0.23	+0.7
3,586,609	+		PFR28_03084	0.47	-2.5
3,586,609	+		PFR28_03084	0.47	+0.5
3,586,609	+		PFR28_03084	0.47	-0.2
3,586,609	+		PFR28_03084	0.47	+0.2
3,586,610	-		PFR28_03084	0.47	-0.5
3,586,610	-		PFR28_03084	0.47	-0.6
3,586,610	-		PFR28_03084	0.47	-2.0
3,586,722	+		PFR28_03084	0.60	+1.1
3,586,722	+		PFR28_03084	0.60	-0.8
3,586,722	+		PFR28_03084	0.60	-0.3
3,586,723	-		PFR28_03084	0.60	-1.1
3,586,723	-		PFR28_03084	0.60	+0.2
3,586,723	-		PFR28_03084	0.60	-1.3
3,586,727	+		PFR28_03084	0.60	-0.2
3,586,727	+		PFR28_03084	0.60	+0.0
3,586,727	+		PFR28_03084	0.60	-2.5
3,586,728	-		PFR28_03084	0.61	+0.2
3,586,728	-		PFR28_03084	0.61	-0.2
3,586,729	+		PFR28_03084	0.61	+0.2
3,586,729	+		PFR28_03084	0.61	+1.3
3,586,729	+		PFR28_03084	0.61	-1.6
3,586,730	-		PFR28_03084	0.61	+0.7
3,586,798	+		PFR28_03084	0.69	-0.5
3,586,798	+		PFR28_03084	0.69	+0.9
3,586,798	+		PFR28_03084	0.69	+0.3
3,586,798	+		PFR28_03084	0.69	-0.3
3,586,798	+		PFR28_03084	0.69	-0.6
3,586,798	+		PFR28_03084	0.69	+0.5
3,586,798	+		PFR28_03084	0.69	+1.0
3,586,798	+		PFR28_03084	0.69	-0.0
3,586,799	-		PFR28_03084	0.69	-0.8
3,586,799	-		PFR28_03084	0.69	+0.2
3,586,799	-		PFR28_03084	0.69	-1.1
3,586,799	-		PFR28_03084	0.69	-0.2
3,586,799	-		PFR28_03084	0.69	+0.5
3,586,799	-		PFR28_03084	0.69	+0.7
3,586,799	-		PFR28_03084	0.69	-0.4
3,586,799	-		PFR28_03084	0.69	-0.8
3,586,799	-		PFR28_03084	0.69	+0.3
3,586,802	+		PFR28_03084	0.69	-0.8
3,586,803	-		PFR28_03084	0.69	+1.0
3,586,803	-		PFR28_03084	0.69	-0.7
3,587,189	+				-1.2
3,587,189	+				+1.0
3,587,189	+				+1.0
3,587,190	-				-0.5
3,587,190	-				-0.8
3,587,190	-				+1.8
3,587,190	-				-0.0
3,587,190	-				-0.0
3,587,191	+				-1.0
3,587,191	+				+0.2
3,587,191	+				-0.4
3,587,192	-				-2.0
3,587,192	-				+0.0
3,587,192	-				+0.7
3,587,192	-				+1.3
3,587,192	-				+0.6
3,587,192	-				+1.8
3,587,192	-				+0.1
3,587,257	+				-2.5
3,587,257	+				+0.5
3,587,258	-				-1.0
3,587,258	-				+1.1
3,587,258	-				-1.5
3,587,258	-				-0.0
3,587,258	-				-1.3
3,587,258	-				+1.8
3,587,258	-				-0.3
3,587,258	-				-0.9
3,587,258	-				+0.5
3,587,258	-				-0.1
3,587,298	+				-1.2
3,587,298	+				+0.1
3,587,298	+				-0.5
3,587,299	-				-0.5
3,587,299	-				-0.2
3,587,299	-				+1.2
3,587,299	-				-0.7
3,587,299	-				-0.5
3,587,299	-				+0.7
3,587,299	-				+1.2
3,587,358	+		PFR28_03085	0.18	-3.7
3,587,358	+		PFR28_03085	0.18	-0.0
3,587,358	+		PFR28_03085	0.18	-1.0
3,587,358	+		PFR28_03085	0.18	-1.3
3,587,359	-		PFR28_03085	0.18	-3.0
3,587,359	-		PFR28_03085	0.18	+0.1
3,587,359	-		PFR28_03085	0.18	+0.4
3,587,359	-		PFR28_03085	0.18	+0.4
3,587,477	-		PFR28_03085	0.34	-0.5
3,587,477	-		PFR28_03085	0.34	-1.5
3,587,778	+		PFR28_03085	0.75	-0.4
3,587,779	-		PFR28_03085	0.76	-0.6
3,587,779	-		PFR28_03085	0.76	-0.8
3,587,779	-		PFR28_03085	0.76	-1.0
3,587,779	-		PFR28_03085	0.76	-0.0
3,587,779	-		PFR28_03085	0.76	-1.3
3,587,904	+				+1.0
3,587,904	+				+0.2
3,587,904	+				-0.3
3,587,904	+				+0.2
3,587,904	+				-0.4
3,587,904	+				-1.0
3,587,905	-				-0.9
3,587,905	-				-1.2
3,587,905	-				-0.4
3,587,905	-				+1.8
3,587,905	-				+0.3
3,587,905	-				-0.3
3,587,905	-				-0.0
3,587,905	-				-1.8
3,587,925	+				+0.0
3,587,926	-				-0.4
3,588,028	+				+0.5
3,588,028	+				+0.5
3,588,070	+				-1.5
3,588,070	+				-0.3
3,588,070	+				-0.6
3,588,070	+				+0.1
3,588,071	-				+0.1
3,588,071	-				-1.6
3,588,071	-				+1.7
3,588,071	-				-0.3
3,588,071	-				+0.3
3,588,071	-				+0.8
3,588,093	-				+0.0
3,588,093	-				-0.8
3,588,502	+		PFR28_03086	0.25	+0.7
3,588,502	+		PFR28_03086	0.25	-0.1
3,588,502	+		PFR28_03086	0.25	+0.5
3,588,502	+		PFR28_03086	0.25	-0.5
3,588,502	+		PFR28_03086	0.25	-0.1
3,588,502	+		PFR28_03086	0.25	+0.1
3,588,503	-		PFR28_03086	0.25	-1.3
3,588,503	-		PFR28_03086	0.25	+1.2
3,588,503	-		PFR28_03086	0.25	+0.8
3,588,503	-		PFR28_03086	0.25	-0.9
3,588,601	+		PFR28_03086	0.30	+1.5
3,588,601	+		PFR28_03086	0.30	-1.3
3,588,601	+		PFR28_03086	0.30	+0.3
3,588,601	+		PFR28_03086	0.30	-0.5
3,588,602	-		PFR28_03086	0.30	+1.0
3,588,602	-		PFR28_03086	0.30	+0.0
3,588,602	-		PFR28_03086	0.30	-0.7
3,588,619	+		PFR28_03086	0.31	+0.7
3,588,619	+		PFR28_03086	0.31	+0.6
3,588,620	-		PFR28_03086	0.31	+1.5
3,588,620	-		PFR28_03086	0.31	+1.1
3,588,620	-		PFR28_03086	0.31	-2.0
3,588,622	+		PFR28_03086	0.31	+0.9
3,588,622	+		PFR28_03086	0.31	+0.1
3,588,622	+		PFR28_03086	0.31	-0.5
3,588,623	-		PFR28_03086	0.31	+2.2
3,588,623	-		PFR28_03086	0.31	-4.1
3,588,623	-		PFR28_03086	0.31	+0.5
3,588,623	-		PFR28_03086	0.31	+0.2
3,588,623	-		PFR28_03086	0.31	+1.8
3,588,658	+		PFR28_03086	0.33	+0.9
3,588,658	+		PFR28_03086	0.33	+0.8
3,588,802	+		PFR28_03086	0.41	+0.0
3,588,802	+		PFR28_03086	0.41	-0.9
3,588,802	+		PFR28_03086	0.41	+2.1
3,588,802	+		PFR28_03086	0.41	-0.0
3,588,942	+		PFR28_03086	0.48	+0.5
3,588,942	+		PFR28_03086	0.48	-1.3
3,588,943	-		PFR28_03086	0.48	-0.3
3,588,943	-		PFR28_03086	0.48	+0.5