Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02829 and PFR28_02830 are separated by 65 nucleotides PFR28_02830 and PFR28_02831 are separated by 28 nucleotides PFR28_02831 and PFR28_02832 are separated by 179 nucleotides PFR28_02832 and PFR28_02833 are separated by 75 nucleotides PFR28_02833 and PFR28_02834 are separated by 53 nucleotides PFR28_02834 and PFR28_02835 are separated by 78 nucleotides PFR28_02835 and PFR28_02836 are separated by 146 nucleotides
PFR28_02829: PFR28_02829 - hypothetical protein, at 3,305,392 to 3,305,874
_02829
PFR28_02830: PFR28_02830 - Putative aminoacrylate hydrolase RutD, at 3,305,940 to 3,306,773
_02830
PFR28_02831: PFR28_02831 - hypothetical protein, at 3,306,802 to 3,307,341
_02831
PFR28_02832: PFR28_02832 - tRNA-Glu, at 3,307,521 to 3,307,596
_02832
PFR28_02833: PFR28_02833 - tRNA-Ala, at 3,307,672 to 3,307,747
_02833
PFR28_02834: PFR28_02834 - tRNA-Glu, at 3,307,801 to 3,307,876
_02834
PFR28_02835: PFR28_02835 - tRNA-Ala, at 3,307,955 to 3,308,030
_02835
PFR28_02836: PFR28_02836 - Glutamate--tRNA ligase, at 3,308,177 to 3,309,658
_02836
Position (kb)
3306
3307
3308 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3305.893 kb on + strand at 3305.894 kb on - strand at 3306.154 kb on + strand, within PFR28_02830 at 3306.154 kb on + strand, within PFR28_02830 at 3306.154 kb on + strand, within PFR28_02830 at 3306.491 kb on + strand, within PFR28_02830 at 3306.492 kb on - strand, within PFR28_02830 at 3306.492 kb on - strand, within PFR28_02830 at 3306.762 kb on + strand at 3306.963 kb on + strand, within PFR28_02831 at 3306.963 kb on + strand, within PFR28_02831 at 3306.964 kb on - strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.208 kb on + strand, within PFR28_02831 at 3307.209 kb on - strand, within PFR28_02831 at 3307.209 kb on - strand, within PFR28_02831 at 3307.306 kb on - strand at 3307.332 kb on + strand at 3307.332 kb on + strand at 3307.358 kb on + strand at 3307.420 kb on + strand at 3307.682 kb on - strand, within PFR28_02833 at 3307.782 kb on - strand at 3307.889 kb on - strand at 3307.889 kb on - strand at 3307.889 kb on - strand at 3307.889 kb on - strand at 3307.951 kb on - strand at 3307.951 kb on - strand at 3307.965 kb on - strand, within PFR28_02835 at 3308.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 3,305,893 + -0.5 3,305,894 - +1.5 3,306,154 + PFR28_02830 0.26 -0.1 3,306,154 + PFR28_02830 0.26 +1.1 3,306,154 + PFR28_02830 0.26 -1.8 3,306,491 + PFR28_02830 0.66 +1.8 3,306,492 - PFR28_02830 0.66 -1.7 3,306,492 - PFR28_02830 0.66 +1.9 3,306,762 + +0.1 3,306,963 + PFR28_02831 0.30 +0.5 3,306,963 + PFR28_02831 0.30 -1.5 3,306,964 - PFR28_02831 0.30 -0.5 3,307,073 + PFR28_02831 0.50 -1.4 3,307,073 + PFR28_02831 0.50 +0.0 3,307,073 + PFR28_02831 0.50 -0.6 3,307,074 - PFR28_02831 0.50 -0.1 3,307,074 - PFR28_02831 0.50 +0.7 3,307,074 - PFR28_02831 0.50 -0.7 3,307,074 - PFR28_02831 0.50 -2.1 3,307,074 - PFR28_02831 0.50 -0.6 3,307,208 + PFR28_02831 0.75 -0.8 3,307,209 - PFR28_02831 0.75 -0.4 3,307,209 - PFR28_02831 0.75 -0.0 3,307,306 - +0.4 3,307,332 + +0.2 3,307,332 + +0.6 3,307,358 + -0.1 3,307,420 + +0.4 3,307,682 - PFR28_02833 0.13 -1.7 3,307,782 - -1.8 3,307,889 - +0.2 3,307,889 - -1.3 3,307,889 - +1.5 3,307,889 - +0.1 3,307,951 - -1.3 3,307,951 - +0.7 3,307,965 - PFR28_02835 0.13 -0.8 3,308,129 + -1.1
Or see this region's nucleotide sequence