Strain Fitness in Pseudomonas sp. RS175 around PFR28_02831

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02829 and PFR28_02830 are separated by 65 nucleotidesPFR28_02830 and PFR28_02831 are separated by 28 nucleotidesPFR28_02831 and PFR28_02832 are separated by 179 nucleotidesPFR28_02832 and PFR28_02833 are separated by 75 nucleotidesPFR28_02833 and PFR28_02834 are separated by 53 nucleotidesPFR28_02834 and PFR28_02835 are separated by 78 nucleotidesPFR28_02835 and PFR28_02836 are separated by 146 nucleotides PFR28_02829: PFR28_02829 - hypothetical protein, at 3,305,392 to 3,305,874 _02829 PFR28_02830: PFR28_02830 - Putative aminoacrylate hydrolase RutD, at 3,305,940 to 3,306,773 _02830 PFR28_02831: PFR28_02831 - hypothetical protein, at 3,306,802 to 3,307,341 _02831 PFR28_02832: PFR28_02832 - tRNA-Glu, at 3,307,521 to 3,307,596 _02832 PFR28_02833: PFR28_02833 - tRNA-Ala, at 3,307,672 to 3,307,747 _02833 PFR28_02834: PFR28_02834 - tRNA-Glu, at 3,307,801 to 3,307,876 _02834 PFR28_02835: PFR28_02835 - tRNA-Ala, at 3,307,955 to 3,308,030 _02835 PFR28_02836: PFR28_02836 - Glutamate--tRNA ligase, at 3,308,177 to 3,309,658 _02836 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -2 -1 0 1 2at 3305.893 kb on + strandat 3305.894 kb on - strandat 3306.154 kb on + strand, within PFR28_02830at 3306.154 kb on + strand, within PFR28_02830at 3306.154 kb on + strand, within PFR28_02830at 3306.491 kb on + strand, within PFR28_02830at 3306.492 kb on - strand, within PFR28_02830at 3306.492 kb on - strand, within PFR28_02830at 3306.762 kb on + strandat 3306.963 kb on + strand, within PFR28_02831at 3306.963 kb on + strand, within PFR28_02831at 3306.964 kb on - strand, within PFR28_02831at 3307.073 kb on + strand, within PFR28_02831at 3307.073 kb on + strand, within PFR28_02831at 3307.073 kb on + strand, within PFR28_02831at 3307.074 kb on - strand, within PFR28_02831at 3307.074 kb on - strand, within PFR28_02831at 3307.074 kb on - strand, within PFR28_02831at 3307.074 kb on - strand, within PFR28_02831at 3307.074 kb on - strand, within PFR28_02831at 3307.208 kb on + strand, within PFR28_02831at 3307.209 kb on - strand, within PFR28_02831at 3307.209 kb on - strand, within PFR28_02831at 3307.306 kb on - strandat 3307.332 kb on + strandat 3307.332 kb on + strandat 3307.358 kb on + strandat 3307.420 kb on + strandat 3307.682 kb on - strand, within PFR28_02833at 3307.782 kb on - strandat 3307.889 kb on - strandat 3307.889 kb on - strandat 3307.889 kb on - strandat 3307.889 kb on - strandat 3307.951 kb on - strandat 3307.951 kb on - strandat 3307.965 kb on - strand, within PFR28_02835at 3308.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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3,305,893 + -0.5
3,305,894 - +1.5
3,306,154 + PFR28_02830 0.26 -0.1
3,306,154 + PFR28_02830 0.26 +1.1
3,306,154 + PFR28_02830 0.26 -1.8
3,306,491 + PFR28_02830 0.66 +1.8
3,306,492 - PFR28_02830 0.66 -1.7
3,306,492 - PFR28_02830 0.66 +1.9
3,306,762 + +0.1
3,306,963 + PFR28_02831 0.30 +0.5
3,306,963 + PFR28_02831 0.30 -1.5
3,306,964 - PFR28_02831 0.30 -0.5
3,307,073 + PFR28_02831 0.50 -1.4
3,307,073 + PFR28_02831 0.50 +0.0
3,307,073 + PFR28_02831 0.50 -0.6
3,307,074 - PFR28_02831 0.50 -0.1
3,307,074 - PFR28_02831 0.50 +0.7
3,307,074 - PFR28_02831 0.50 -0.7
3,307,074 - PFR28_02831 0.50 -2.1
3,307,074 - PFR28_02831 0.50 -0.6
3,307,208 + PFR28_02831 0.75 -0.8
3,307,209 - PFR28_02831 0.75 -0.4
3,307,209 - PFR28_02831 0.75 -0.0
3,307,306 - +0.4
3,307,332 + +0.2
3,307,332 + +0.6
3,307,358 + -0.1
3,307,420 + +0.4
3,307,682 - PFR28_02833 0.13 -1.7
3,307,782 - -1.8
3,307,889 - +0.2
3,307,889 - -1.3
3,307,889 - +1.5
3,307,889 - +0.1
3,307,951 - -1.3
3,307,951 - +0.7
3,307,965 - PFR28_02835 0.13 -0.8
3,308,129 + -1.1

Or see this region's nucleotide sequence