Strain Fitness in Pseudomonas sp. RS175 around PFR28_02478

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
2,953,979	-		PFR28_02477	0.43	+0.4
2,954,247	+		PFR28_02477	0.74	-1.7
2,954,247	+		PFR28_02477	0.74	+0.2
2,954,247	+		PFR28_02477	0.74	-2.8
2,954,247	+		PFR28_02477	0.74	+0.4
2,954,247	+		PFR28_02477	0.74	+0.3
2,954,247	+		PFR28_02477	0.74	+0.7
2,954,247	+		PFR28_02477	0.74	-0.1
2,954,248	-		PFR28_02477	0.74	-0.7
2,954,248	-		PFR28_02477	0.74	-0.8
2,954,248	-		PFR28_02477	0.74	+0.8
2,954,248	-		PFR28_02477	0.74	-1.0
2,954,248	-		PFR28_02477	0.74	-1.5
2,954,248	-		PFR28_02477	0.74	+0.5
2,954,248	-		PFR28_02477	0.74	-0.6
2,954,248	-		PFR28_02477	0.74	-1.4
2,954,248	-		PFR28_02477	0.74	-0.0
2,954,253	-		PFR28_02477	0.75	-2.8
2,954,253	-		PFR28_02477	0.75	+0.8
2,954,358	+		PFR28_02477	0.87	-0.1
2,954,358	+		PFR28_02477	0.87	-2.4
2,954,358	+		PFR28_02477	0.87	+0.4
2,954,482	+				+1.4
2,954,483	-				-1.2
2,954,483	-				+0.5
2,954,532	+				-1.5
2,954,540	+				+0.1
2,954,540	+				+0.2
2,954,540	+				+0.8
2,954,540	+				-0.4
2,954,540	+				+0.4
2,954,541	-				-0.9
2,954,541	-				+0.4
2,954,541	-				-0.1
2,954,605	+				+0.9
2,954,606	-				-0.1
2,954,649	-				-0.1
2,954,682	+				+1.7
2,954,683	-				+0.4
2,954,686	+				+1.4
2,954,686	+				+0.0
2,954,686	+				-0.2
2,954,687	-				+1.5
2,954,687	-				+0.8
2,954,697	-				+1.0
2,954,697	-				+1.0
2,954,697	-				-1.1
2,954,743	-				-1.4
2,954,746	-				-0.5
2,954,766	+				+0.9
2,954,767	-				+0.8
2,954,767	-				-3.9
2,954,770	+				+0.2
2,954,849	+				-0.1
2,954,850	-				-1.9
2,954,879	+				+0.8
2,954,880	-				-0.3
2,954,911	+				-0.8
2,954,911	+				-0.0
2,954,912	-				+0.7
2,954,912	-				+1.6
2,954,912	-				-1.7
2,954,930	+				+0.2
2,954,930	+				-1.3
2,955,072	-		PFR28_02478	0.38	-0.3
2,955,154	+		PFR28_02478	0.60	-0.4
2,955,155	-		PFR28_02478	0.60	+0.4
2,955,185	+		PFR28_02478	0.68	-0.1
2,955,186	-		PFR28_02478	0.69	-0.5
2,955,263	+		PFR28_02478	0.89	-1.1
2,955,291	+				-0.3
2,955,291	+				+1.0
2,955,292	-				-0.5
2,955,292	-				-3.5
2,955,295	+				-0.0
2,955,295	+				-0.3
2,955,295	+				+1.2
2,955,295	+				+0.2
2,955,295	+				-1.0
2,955,296	-				+0.5
2,955,296	-				-1.1
2,955,296	-				+0.1
2,955,296	-				-0.6
2,955,392	+				+0.2
2,955,392	+				-1.7
2,955,392	+				+0.2
2,955,393	-				+0.6
2,955,394	+				+0.1
2,955,394	+				-0.4
2,955,464	+		PFR28_02479	0.14	-1.1
2,955,464	+		PFR28_02479	0.14	+0.8
2,955,465	-		PFR28_02479	0.14	-0.0
2,955,465	-		PFR28_02479	0.14	+0.1
2,955,465	-		PFR28_02479	0.14	+0.8
2,955,472	+		PFR28_02479	0.15	+0.2
2,955,472	+		PFR28_02479	0.15	-1.8
2,955,472	+		PFR28_02479	0.15	-2.0
2,955,472	+		PFR28_02479	0.15	-0.5
2,955,472	+		PFR28_02479	0.15	-0.3
2,955,472	+		PFR28_02479	0.15	-1.8
2,955,473	-		PFR28_02479	0.15	-0.1
2,955,473	-		PFR28_02479	0.15	+0.4
2,955,476	+		PFR28_02479	0.16	+1.1
2,955,476	+		PFR28_02479	0.16	+0.0
2,955,476	+		PFR28_02479	0.16	+0.8
2,955,477	-		PFR28_02479	0.16	+0.1
2,955,477	-		PFR28_02479	0.16	+0.1
2,955,598	-		PFR28_02479	0.39	+0.5
2,955,771	+		PFR28_02479	0.71	+1.2
2,955,771	+		PFR28_02479	0.71	-1.3
2,955,771	+		PFR28_02479	0.71	+1.8
2,955,772	-		PFR28_02479	0.71	-0.1
2,955,772	-		PFR28_02479	0.71	-1.2
2,955,772	-		PFR28_02479	0.71	-1.3
2,955,772	-		PFR28_02479	0.71	-0.8
2,955,871	-				-0.7
2,955,982	-				+0.5
2,956,172	+		PFR28_02480	0.13	-1.0
2,956,172	+		PFR28_02480	0.13	-1.3
2,956,172	+		PFR28_02480	0.13	+0.5
2,956,172	+		PFR28_02480	0.13	-1.0
2,956,173	-		PFR28_02480	0.13	-0.4
2,956,173	-		PFR28_02480	0.13	+0.5
2,956,173	-		PFR28_02480	0.13	+0.6
2,956,173	-		PFR28_02480	0.13	-0.5
2,956,210	+		PFR28_02480	0.20	+1.0
2,956,210	+		PFR28_02480	0.20	-0.5
2,956,229	+		PFR28_02480	0.24	-0.2
2,956,295	+		PFR28_02480	0.36	-0.1
2,956,296	-		PFR28_02480	0.36	+0.3
2,956,296	-		PFR28_02480	0.36	+0.3
2,956,296	-		PFR28_02480	0.36	+0.3
2,956,296	-		PFR28_02480	0.36	+0.1
2,956,296	-		PFR28_02480	0.36	-0.1