Strain Fitness in Pseudomonas sp. RS175 around PFR28_01913

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
2,170,548	+		PFR28_01912	0.41	+0.8
2,170,548	+		PFR28_01912	0.41	+1.2
2,170,548	+		PFR28_01912	0.41	+1.7
2,170,549	-		PFR28_01912	0.41	+0.3
2,170,549	-		PFR28_01912	0.41	+0.4
2,170,549	-		PFR28_01912	0.41	-0.3
2,170,549	-		PFR28_01912	0.41	-0.1
2,170,558	+		PFR28_01912	0.42	-0.2
2,170,558	+		PFR28_01912	0.42	-0.8
2,170,558	+		PFR28_01912	0.42	+0.4
2,170,558	+		PFR28_01912	0.42	+0.3
2,170,558	+		PFR28_01912	0.42	+0.1
2,170,559	-		PFR28_01912	0.42	-1.3
2,170,559	-		PFR28_01912	0.42	+0.8
2,170,562	+		PFR28_01912	0.43	-0.2
2,170,562	+		PFR28_01912	0.43	+0.8
2,170,562	+		PFR28_01912	0.43	+0.1
2,170,562	+		PFR28_01912	0.43	+0.8
2,170,562	+		PFR28_01912	0.43	-0.0
2,170,562	+		PFR28_01912	0.43	+1.9
2,170,562	+		PFR28_01912	0.43	-1.3
2,170,562	+		PFR28_01912	0.43	+2.2
2,170,562	+		PFR28_01912	0.43	+0.8
2,170,562	+		PFR28_01912	0.43	+1.3
2,170,562	+		PFR28_01912	0.43	-2.1
2,170,562	+		PFR28_01912	0.43	-0.7
2,170,562	+		PFR28_01912	0.43	-0.6
2,170,562	+		PFR28_01912	0.43	+0.3
2,170,562	+		PFR28_01912	0.43	-1.3
2,170,563	-		PFR28_01912	0.43	-0.7
2,170,563	-		PFR28_01912	0.43	-3.1
2,170,563	-		PFR28_01912	0.43	-1.2
2,170,563	-		PFR28_01912	0.43	+1.2
2,170,563	-		PFR28_01912	0.43	-0.4
2,170,563	-		PFR28_01912	0.43	-0.3
2,170,563	-		PFR28_01912	0.43	-0.0
2,170,563	-		PFR28_01912	0.43	+1.0
2,170,563	-		PFR28_01912	0.43	-1.0
2,170,563	-		PFR28_01912	0.43	-0.8
2,170,563	-		PFR28_01912	0.43	+1.9
2,170,563	-		PFR28_01912	0.43	-1.6
2,170,613	+		PFR28_01912	0.47	+0.3
2,170,613	+		PFR28_01912	0.47	-1.4
2,170,613	+		PFR28_01912	0.47	-0.5
2,170,614	-		PFR28_01912	0.47	-0.1
2,170,801	+		PFR28_01912	0.63	+4.1
2,170,871	+		PFR28_01912	0.69	-1.0
2,170,872	-		PFR28_01912	0.69	+0.5
2,170,939	-		PFR28_01912	0.74	-3.6
2,170,939	-		PFR28_01912	0.74	+0.7
2,170,939	-		PFR28_01912	0.74	-1.0
2,170,997	+		PFR28_01912	0.79	+0.8
2,170,997	+		PFR28_01912	0.79	+0.7
2,170,997	+		PFR28_01912	0.79	+0.2
2,170,998	-		PFR28_01912	0.79	-0.4
2,170,998	-		PFR28_01912	0.79	-0.9
2,170,998	-		PFR28_01912	0.79	+2.3
2,171,009	+		PFR28_01912	0.80	-0.3
2,171,010	-		PFR28_01912	0.80	-2.8
2,171,010	-		PFR28_01912	0.80	-2.1
2,171,123	+		PFR28_01912	0.90	+0.3
2,171,123	+		PFR28_01912	0.90	-0.2
2,171,123	+		PFR28_01912	0.90	+1.3
2,171,124	-				-0.8
2,171,124	-				-0.5
2,171,124	-				+1.9
2,171,124	-				+1.0
2,171,192	+				+0.3
2,171,192	+				-0.7
2,171,193	-				-0.1
2,171,193	-				+1.3
2,171,432	+		PFR28_01913	0.15	-0.4
2,171,472	+		PFR28_01913	0.24	-1.9
2,171,530	+		PFR28_01913	0.36	-0.3
2,171,531	-		PFR28_01913	0.37	-1.7
2,171,531	-		PFR28_01913	0.37	+0.3
2,171,594	+		PFR28_01913	0.50	+0.8
2,171,595	-		PFR28_01913	0.51	-0.7
2,171,595	-		PFR28_01913	0.51	-1.1
2,171,766	-		PFR28_01913	0.88	+0.3
2,171,828	+				-0.5
2,172,057	+				+0.3
2,172,057	+				-1.6
2,172,100	+				-0.3
2,172,100	+				-0.8
2,172,100	+				-2.4
2,172,100	+				+1.8
2,172,100	+				-0.5
2,172,100	+				+0.1
2,172,101	-				+0.9
2,172,101	-				-1.2
2,172,101	-				-0.3
2,172,106	+				+0.1
2,172,106	+				+0.6
2,172,106	+				-0.7
2,172,106	+				+0.2
2,172,106	+				-3.8
2,172,106	+				+1.3
2,172,106	+				-2.6
2,172,106	+				-1.2
2,172,106	+				+1.0
2,172,107	-				+0.6
2,172,107	-				+0.3
2,172,107	-				+0.7
2,172,107	-				+0.2
2,172,466	+		PFR28_01914	0.63	+1.0
2,172,466	+		PFR28_01914	0.63	+0.8
2,172,466	+		PFR28_01914	0.63	+0.1
2,172,466	+		PFR28_01914	0.63	-1.0
2,172,466	+		PFR28_01914	0.63	-0.1
2,172,466	+		PFR28_01914	0.63	+0.5
2,172,466	+		PFR28_01914	0.63	+0.2
2,172,466	+		PFR28_01914	0.63	+0.3
2,172,466	+		PFR28_01914	0.63	+1.6
2,172,466	+		PFR28_01914	0.63	+0.0
2,172,467	-		PFR28_01914	0.63	-2.7
2,172,467	-		PFR28_01914	0.63	-2.1
2,172,467	-		PFR28_01914	0.63	+0.0
2,172,467	-		PFR28_01914	0.63	+0.8
2,172,467	-		PFR28_01914	0.63	-0.3
2,172,549	-		PFR28_01914	0.76	-0.1
2,172,549	-		PFR28_01914	0.76	-0.2
2,172,793	+				+2.3
2,172,793	+				-0.1
2,172,794	-				-2.0
2,172,794	-				+0.2
2,172,794	-				+0.7
2,172,794	-				-1.4
2,172,794	-				-0.1
2,172,817	-				-1.1
2,172,817	-				+0.7