Strain Fitness in Pseudomonas sp. RS175 around PFR28_01486

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
1,626,164	-		PFR28_01484	0.42	-0.2
1,626,164	-		PFR28_01484	0.42	-2.3
1,626,164	-		PFR28_01484	0.42	-0.0
1,626,202	+		PFR28_01484	0.46	+0.4
1,626,202	+		PFR28_01484	0.46	-2.7
1,626,203	-		PFR28_01484	0.46	+1.1
1,626,242	-		PFR28_01484	0.50	-0.2
1,626,367	-		PFR28_01484	0.61	+0.4
1,626,367	-		PFR28_01484	0.61	+1.6
1,626,390	-		PFR28_01484	0.63	+0.4
1,626,414	+		PFR28_01484	0.66	-0.4
1,626,415	-		PFR28_01484	0.66	-0.1
1,626,581	-		PFR28_01484	0.81	-1.4
1,626,631	+		PFR28_01484	0.86	+1.2
1,626,640	+		PFR28_01484	0.87	+1.2
1,626,640	+		PFR28_01484	0.87	-0.3
1,626,641	-		PFR28_01484	0.87	+0.3
1,626,641	-		PFR28_01484	0.87	-0.7
1,626,697	+				-3.3
1,626,698	-				+1.2
1,626,698	-				+0.3
1,626,698	-				-1.9
1,626,698	-				-0.3
1,626,712	+				-0.2
1,626,721	-				+1.0
1,626,782	+				-2.3
1,626,782	+				+0.4
1,626,782	+				+0.9
1,626,782	+				-1.7
1,626,782	+				-1.5
1,626,782	+				-0.2
1,626,782	+				+1.2
1,626,782	+				-0.6
1,626,782	+				+0.9
1,626,783	-				-0.5
1,626,783	-				+1.1
1,626,783	-				-1.6
1,626,783	-				+1.0
1,626,783	-				+1.4
1,626,783	-				-0.1
1,626,783	-				-0.5
1,626,783	-				-0.1
1,626,805	+				-1.4
1,626,805	+				+0.8
1,626,806	-				+1.9
1,626,838	+				+1.4
1,626,842	+				-1.8
1,626,843	-				-0.9
1,626,843	-				+0.4
1,626,865	+		PFR28_01485	0.11	-3.2
1,626,865	+		PFR28_01485	0.11	-1.0
1,626,866	-		PFR28_01485	0.12	-2.0
1,626,866	-		PFR28_01485	0.12	-0.2
1,626,866	-		PFR28_01485	0.12	-0.0
1,626,866	-		PFR28_01485	0.12	-0.6
1,626,866	-		PFR28_01485	0.12	+0.4
1,626,866	-		PFR28_01485	0.12	+0.3
1,626,970	-		PFR28_01485	0.42	+1.4
1,627,181	+				-1.1
1,627,181	+				+1.1
1,627,182	-				-1.7
1,627,182	-				-0.3
1,627,263	+				+0.3
1,627,566	+		PFR28_01486	0.28	-1.6
1,627,720	+		PFR28_01486	0.39	-3.4
1,627,720	+		PFR28_01486	0.39	-0.9
1,627,721	-		PFR28_01486	0.39	+0.6
1,627,721	-		PFR28_01486	0.39	+0.2
1,628,200	+		PFR28_01486	0.73	+0.6
1,628,201	-		PFR28_01486	0.73	-0.8
1,628,201	-		PFR28_01486	0.73	+0.0
1,628,201	-		PFR28_01486	0.73	-3.1
1,628,201	-		PFR28_01486	0.73	-0.9
1,628,206	-		PFR28_01486	0.73	-1.4
1,628,449	+				-0.7
1,628,474	-				-2.7
1,628,647	+				-2.0
1,628,648	-				-2.7
1,628,658	-				-1.2
1,628,722	+				+0.2
1,628,722	+				+0.7
1,628,722	+				+0.1
1,628,722	+				-2.6
1,628,723	-				+0.8
1,628,812	+		PFR28_01487	0.21	+0.2
1,628,812	+		PFR28_01487	0.21	-0.7
1,628,812	+		PFR28_01487	0.21	-0.6
1,628,812	+		PFR28_01487	0.21	-0.4
1,628,813	-		PFR28_01487	0.21	-0.0
1,628,843	-		PFR28_01487	0.25	-0.7
1,628,875	+		PFR28_01487	0.29	+0.3
1,628,875	+		PFR28_01487	0.29	+1.1
1,628,876	-		PFR28_01487	0.29	-2.3
1,628,876	-		PFR28_01487	0.29	-1.2
1,628,897	-		PFR28_01487	0.32	-0.5
1,628,897	-		PFR28_01487	0.32	-0.1
1,628,965	+		PFR28_01487	0.40	-3.2
1,628,966	-		PFR28_01487	0.40	-1.1
1,628,989	+		PFR28_01487	0.43	-0.3
1,628,989	+		PFR28_01487	0.43	+0.8
1,628,989	+		PFR28_01487	0.43	+0.6
1,628,989	+		PFR28_01487	0.43	-0.2
1,628,989	+		PFR28_01487	0.43	-0.3
1,628,989	+		PFR28_01487	0.43	-2.6
1,628,989	+		PFR28_01487	0.43	-0.6
1,628,989	+		PFR28_01487	0.43	-0.1
1,628,990	-		PFR28_01487	0.43	+0.6
1,628,990	-		PFR28_01487	0.43	+2.2
1,628,990	-		PFR28_01487	0.43	-1.6
1,629,079	+		PFR28_01487	0.55	-0.3
1,629,080	-		PFR28_01487	0.55	+2.1
1,629,229	+		PFR28_01487	0.74	+1.7
1,629,229	+		PFR28_01487	0.74	-0.4
1,629,230	-		PFR28_01487	0.74	-1.6
1,629,265	+		PFR28_01487	0.78	-0.3
1,629,265	+		PFR28_01487	0.78	-0.1
1,629,265	+		PFR28_01487	0.78	-0.1
1,629,265	+		PFR28_01487	0.78	+0.9
1,629,265	+		PFR28_01487	0.78	+1.3
1,629,265	+		PFR28_01487	0.78	-0.3
1,629,265	+		PFR28_01487	0.78	+0.4
1,629,266	-		PFR28_01487	0.78	+0.6
1,629,266	-		PFR28_01487	0.78	-0.1
1,629,266	-		PFR28_01487	0.78	+0.7
1,629,266	-		PFR28_01487	0.78	+0.2
1,629,316	+		PFR28_01487	0.85	-1.0
1,629,316	+		PFR28_01487	0.85	+1.2
1,629,317	-		PFR28_01487	0.85	+0.5
1,629,317	-		PFR28_01487	0.85	+0.7
1,629,317	-		PFR28_01487	0.85	-0.6
1,629,334	+		PFR28_01487	0.87	+0.1
1,629,334	+		PFR28_01487	0.87	+0.5
1,629,334	+		PFR28_01487	0.87	+0.4
1,629,335	-		PFR28_01487	0.87	-2.1
1,629,474	+				+0.7
1,629,475	-				+0.6
1,629,475	-				-0.9