Strain Fitness in Pseudomonas sp. RS175 around PFR28_01084

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01083 and PFR28_01084 are separated by 161 nucleotidesPFR28_01084 and PFR28_01085 overlap by 59 nucleotides PFR28_01083: PFR28_01083 - putative copper-importing P-type ATPase A, at 1,195,314 to 1,197,764 _01083 PFR28_01084: PFR28_01084 - hypothetical protein, at 1,197,926 to 1,198,534 _01084 PFR28_01085: PFR28_01085 - hypothetical protein, at 1,198,476 to 1,199,891 _01085 Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1196.941 kb on + strand, within PFR28_01083at 1196.941 kb on + strand, within PFR28_01083at 1196.941 kb on + strand, within PFR28_01083at 1196.942 kb on - strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.986 kb on + strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1196.987 kb on - strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.082 kb on + strand, within PFR28_01083at 1197.083 kb on - strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.360 kb on + strand, within PFR28_01083at 1197.361 kb on - strand, within PFR28_01083at 1197.538 kb on + strandat 1197.538 kb on + strandat 1197.610 kb on + strandat 1197.613 kb on + strandat 1197.613 kb on + strandat 1197.613 kb on + strandat 1197.614 kb on - strandat 1197.704 kb on + strandat 1197.742 kb on + strandat 1197.844 kb on - strandat 1197.844 kb on - strandat 1197.844 kb on - strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.927 kb on + strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1197.928 kb on - strandat 1198.092 kb on + strand, within PFR28_01084at 1198.092 kb on + strand, within PFR28_01084at 1198.317 kb on + strand, within PFR28_01084at 1198.317 kb on + strand, within PFR28_01084at 1198.318 kb on - strand, within PFR28_01084at 1198.318 kb on - strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.320 kb on + strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.321 kb on - strand, within PFR28_01084at 1198.434 kb on + strand, within PFR28_01084at 1198.434 kb on + strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.435 kb on - strand, within PFR28_01084at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.696 kb on + strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.697 kb on - strand, within PFR28_01085at 1198.738 kb on + strand, within PFR28_01085at 1198.739 kb on - strand, within PFR28_01085at 1198.739 kb on - strand, within PFR28_01085at 1198.895 kb on + strand, within PFR28_01085at 1198.934 kb on - strand, within PFR28_01085at 1198.934 kb on - strand, within PFR28_01085at 1199.107 kb on + strand, within PFR28_01085at 1199.108 kb on - strand, within PFR28_01085at 1199.108 kb on - strand, within PFR28_01085at 1199.108 kb on - strand, within PFR28_01085at 1199.108 kb on - strand, within PFR28_01085at 1199.108 kb on - strand, within PFR28_01085at 1199.209 kb on + strand, within PFR28_01085at 1199.210 kb on - strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.221 kb on + strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.222 kb on - strand, within PFR28_01085at 1199.260 kb on + strand, within PFR28_01085at 1199.260 kb on + strand, within PFR28_01085at 1199.260 kb on + strand, within PFR28_01085at 1199.261 kb on - strand, within PFR28_01085at 1199.261 kb on - strand, within PFR28_01085at 1199.294 kb on - strand, within PFR28_01085at 1199.294 kb on - strand, within PFR28_01085at 1199.294 kb on - strand, within PFR28_01085at 1199.294 kb on - strand, within PFR28_01085at 1199.356 kb on + strand, within PFR28_01085at 1199.357 kb on - strand, within PFR28_01085

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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1,196,941 + PFR28_01083 0.66 -0.0
1,196,941 + PFR28_01083 0.66 -1.0
1,196,941 + PFR28_01083 0.66 -0.4
1,196,942 - PFR28_01083 0.66 -0.7
1,196,986 + PFR28_01083 0.68 -1.1
1,196,986 + PFR28_01083 0.68 -2.9
1,196,986 + PFR28_01083 0.68 -2.5
1,196,986 + PFR28_01083 0.68 -1.3
1,196,986 + PFR28_01083 0.68 -3.4
1,196,986 + PFR28_01083 0.68 -0.0
1,196,986 + PFR28_01083 0.68 +0.9
1,196,986 + PFR28_01083 0.68 -1.3
1,196,987 - PFR28_01083 0.68 +1.5
1,196,987 - PFR28_01083 0.68 +0.3
1,196,987 - PFR28_01083 0.68 -0.3
1,197,082 + PFR28_01083 0.72 -0.4
1,197,082 + PFR28_01083 0.72 -1.3
1,197,082 + PFR28_01083 0.72 -2.4
1,197,083 - PFR28_01083 0.72 -1.1
1,197,360 + PFR28_01083 0.83 -2.8
1,197,360 + PFR28_01083 0.83 -0.2
1,197,360 + PFR28_01083 0.83 +0.3
1,197,361 - PFR28_01083 0.84 -1.6
1,197,538 + -0.9
1,197,538 + -0.0
1,197,610 + -3.3
1,197,613 + -1.0
1,197,613 + -0.1
1,197,613 + -0.6
1,197,614 - -2.2
1,197,704 + +1.5
1,197,742 + -1.9
1,197,844 - -1.8
1,197,844 - +0.2
1,197,844 - +0.7
1,197,927 + -2.0
1,197,927 + +0.8
1,197,927 + -1.6
1,197,927 + -1.0
1,197,928 - -0.8
1,197,928 - -0.5
1,197,928 - +0.2
1,197,928 - -0.1
1,198,092 + PFR28_01084 0.27 +0.4
1,198,092 + PFR28_01084 0.27 -2.5
1,198,317 + PFR28_01084 0.64 -0.8
1,198,317 + PFR28_01084 0.64 -2.4
1,198,318 - PFR28_01084 0.64 +0.8
1,198,318 - PFR28_01084 0.64 -0.2
1,198,320 + PFR28_01084 0.65 -1.2
1,198,320 + PFR28_01084 0.65 +0.4
1,198,320 + PFR28_01084 0.65 -0.2
1,198,320 + PFR28_01084 0.65 +0.4
1,198,320 + PFR28_01084 0.65 -0.2
1,198,321 - PFR28_01084 0.65 +1.4
1,198,321 - PFR28_01084 0.65 -0.5
1,198,321 - PFR28_01084 0.65 -0.7
1,198,321 - PFR28_01084 0.65 -1.4
1,198,321 - PFR28_01084 0.65 -3.2
1,198,321 - PFR28_01084 0.65 -0.5
1,198,434 + PFR28_01084 0.83 +0.0
1,198,434 + PFR28_01084 0.83 -1.0
1,198,435 - PFR28_01084 0.84 -0.5
1,198,435 - PFR28_01084 0.84 -1.3
1,198,435 - PFR28_01084 0.84 +0.7
1,198,696 + PFR28_01085 0.16 -2.5
1,198,696 + PFR28_01085 0.16 +0.5
1,198,696 + PFR28_01085 0.16 +1.1
1,198,696 + PFR28_01085 0.16 -1.6
1,198,696 + PFR28_01085 0.16 -1.5
1,198,696 + PFR28_01085 0.16 +1.0
1,198,696 + PFR28_01085 0.16 +1.9
1,198,696 + PFR28_01085 0.16 -1.5
1,198,696 + PFR28_01085 0.16 -1.6
1,198,696 + PFR28_01085 0.16 +1.5
1,198,696 + PFR28_01085 0.16 -1.6
1,198,696 + PFR28_01085 0.16 -1.8
1,198,697 - PFR28_01085 0.16 +0.1
1,198,697 - PFR28_01085 0.16 -0.2
1,198,697 - PFR28_01085 0.16 +0.5
1,198,697 - PFR28_01085 0.16 +1.0
1,198,697 - PFR28_01085 0.16 +0.7
1,198,697 - PFR28_01085 0.16 +0.7
1,198,697 - PFR28_01085 0.16 +0.7
1,198,697 - PFR28_01085 0.16 -2.5
1,198,697 - PFR28_01085 0.16 +0.8
1,198,697 - PFR28_01085 0.16 +0.3
1,198,697 - PFR28_01085 0.16 +0.7
1,198,697 - PFR28_01085 0.16 +1.0
1,198,697 - PFR28_01085 0.16 -1.4
1,198,697 - PFR28_01085 0.16 -0.1
1,198,697 - PFR28_01085 0.16 -0.0
1,198,697 - PFR28_01085 0.16 -0.3
1,198,697 - PFR28_01085 0.16 -0.3
1,198,697 - PFR28_01085 0.16 +0.5
1,198,697 - PFR28_01085 0.16 -0.9
1,198,738 + PFR28_01085 0.19 +1.7
1,198,739 - PFR28_01085 0.19 +1.0
1,198,739 - PFR28_01085 0.19 +0.7
1,198,895 + PFR28_01085 0.30 +2.1
1,198,934 - PFR28_01085 0.32 +0.8
1,198,934 - PFR28_01085 0.32 +0.9
1,199,107 + PFR28_01085 0.45 -2.0
1,199,108 - PFR28_01085 0.45 -0.4
1,199,108 - PFR28_01085 0.45 +0.7
1,199,108 - PFR28_01085 0.45 -0.0
1,199,108 - PFR28_01085 0.45 -0.0
1,199,108 - PFR28_01085 0.45 +0.8
1,199,209 + PFR28_01085 0.52 -1.0
1,199,210 - PFR28_01085 0.52 -0.9
1,199,221 + PFR28_01085 0.53 -0.2
1,199,221 + PFR28_01085 0.53 +0.9
1,199,221 + PFR28_01085 0.53 +1.1
1,199,221 + PFR28_01085 0.53 +1.2
1,199,221 + PFR28_01085 0.53 -1.0
1,199,221 + PFR28_01085 0.53 -1.3
1,199,221 + PFR28_01085 0.53 -0.3
1,199,221 + PFR28_01085 0.53 +0.0
1,199,221 + PFR28_01085 0.53 +1.0
1,199,222 - PFR28_01085 0.53 -1.4
1,199,222 - PFR28_01085 0.53 -1.0
1,199,222 - PFR28_01085 0.53 +1.4
1,199,222 - PFR28_01085 0.53 -1.2
1,199,222 - PFR28_01085 0.53 +0.7
1,199,222 - PFR28_01085 0.53 -0.8
1,199,222 - PFR28_01085 0.53 -2.8
1,199,222 - PFR28_01085 0.53 -2.8
1,199,222 - PFR28_01085 0.53 +1.5
1,199,222 - PFR28_01085 0.53 -0.6
1,199,222 - PFR28_01085 0.53 +1.1
1,199,222 - PFR28_01085 0.53 +1.6
1,199,222 - PFR28_01085 0.53 -0.6
1,199,260 + PFR28_01085 0.55 -1.0
1,199,260 + PFR28_01085 0.55 +1.5
1,199,260 + PFR28_01085 0.55 -1.5
1,199,261 - PFR28_01085 0.55 -1.5
1,199,261 - PFR28_01085 0.55 +0.9
1,199,294 - PFR28_01085 0.58 +0.6
1,199,294 - PFR28_01085 0.58 +0.3
1,199,294 - PFR28_01085 0.58 -0.2
1,199,294 - PFR28_01085 0.58 -1.5
1,199,356 + PFR28_01085 0.62 -1.8
1,199,357 - PFR28_01085 0.62 +0.4

Or see this region's nucleotide sequence