Strain Fitness in Pseudomonas sp. RS175 around PFR28_00876

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00875 and PFR28_00876 are separated by 228 nucleotidesPFR28_00876 and PFR28_00877 are separated by 391 nucleotides PFR28_00875: PFR28_00875 - Phosphoglycerol transferase I, at 945,239 to 947,332 _00875 PFR28_00876: PFR28_00876 - hypothetical protein, at 947,561 to 947,713 _00876 PFR28_00877: PFR28_00877 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 948,105 to 948,920 _00877 Position (kb) 947 948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 946.649 kb on + strand, within PFR28_00875at 946.649 kb on + strand, within PFR28_00875at 946.649 kb on + strand, within PFR28_00875at 946.649 kb on + strand, within PFR28_00875at 946.649 kb on + strand, within PFR28_00875at 946.649 kb on + strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.650 kb on - strand, within PFR28_00875at 946.764 kb on - strand, within PFR28_00875at 946.814 kb on + strand, within PFR28_00875at 946.814 kb on + strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.815 kb on - strand, within PFR28_00875at 946.954 kb on + strand, within PFR28_00875at 946.960 kb on + strand, within PFR28_00875at 946.960 kb on + strand, within PFR28_00875at 946.960 kb on + strand, within PFR28_00875at 946.986 kb on + strand, within PFR28_00875at 947.146 kb on - strandat 947.184 kb on - strandat 947.407 kb on + strandat 947.466 kb on + strandat 947.466 kb on + strandat 947.474 kb on + strandat 947.564 kb on + strandat 947.564 kb on + strandat 947.564 kb on + strandat 947.564 kb on + strandat 947.564 kb on + strandat 947.565 kb on - strandat 947.565 kb on - strandat 947.565 kb on - strandat 947.576 kb on + strandat 947.577 kb on - strand, within PFR28_00876at 947.585 kb on + strand, within PFR28_00876at 947.585 kb on + strand, within PFR28_00876at 947.585 kb on + strand, within PFR28_00876at 947.586 kb on - strand, within PFR28_00876at 947.632 kb on - strand, within PFR28_00876at 947.698 kb on + strandat 947.698 kb on + strandat 947.698 kb on + strandat 947.698 kb on + strandat 947.698 kb on + strandat 947.699 kb on - strandat 947.699 kb on - strandat 947.702 kb on + strandat 947.702 kb on + strandat 947.702 kb on + strandat 947.702 kb on + strandat 947.702 kb on + strandat 947.703 kb on - strandat 947.703 kb on - strandat 947.703 kb on - strandat 947.809 kb on + strandat 947.838 kb on + strandat 948.002 kb on + strandat 948.030 kb on + strandat 948.030 kb on + strandat 948.030 kb on + strandat 948.030 kb on + strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.031 kb on - strandat 948.062 kb on + strandat 948.104 kb on + strandat 948.105 kb on - strandat 948.291 kb on + strand, within PFR28_00877at 948.291 kb on + strand, within PFR28_00877at 948.291 kb on + strand, within PFR28_00877at 948.292 kb on - strand, within PFR28_00877at 948.292 kb on - strand, within PFR28_00877at 948.292 kb on - strand, within PFR28_00877at 948.476 kb on - strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.552 kb on + strand, within PFR28_00877at 948.553 kb on - strand, within PFR28_00877at 948.553 kb on - strand, within PFR28_00877at 948.553 kb on - strand, within PFR28_00877at 948.553 kb on - strand, within PFR28_00877at 948.553 kb on - strand, within PFR28_00877

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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946,649 + PFR28_00875 0.67 +0.6
946,649 + PFR28_00875 0.67 -0.2
946,649 + PFR28_00875 0.67 -0.2
946,649 + PFR28_00875 0.67 +0.7
946,649 + PFR28_00875 0.67 -0.4
946,649 + PFR28_00875 0.67 -3.2
946,650 - PFR28_00875 0.67 -0.9
946,650 - PFR28_00875 0.67 +1.0
946,650 - PFR28_00875 0.67 -1.0
946,650 - PFR28_00875 0.67 -0.8
946,650 - PFR28_00875 0.67 +0.5
946,650 - PFR28_00875 0.67 +0.9
946,764 - PFR28_00875 0.73 +0.2
946,814 + PFR28_00875 0.75 +0.0
946,814 + PFR28_00875 0.75 -0.1
946,815 - PFR28_00875 0.75 -1.1
946,815 - PFR28_00875 0.75 -0.1
946,815 - PFR28_00875 0.75 -0.6
946,815 - PFR28_00875 0.75 +0.5
946,815 - PFR28_00875 0.75 -2.4
946,815 - PFR28_00875 0.75 -0.7
946,815 - PFR28_00875 0.75 -1.9
946,815 - PFR28_00875 0.75 +0.6
946,954 + PFR28_00875 0.82 -3.8
946,960 + PFR28_00875 0.82 -0.0
946,960 + PFR28_00875 0.82 -0.1
946,960 + PFR28_00875 0.82 -0.3
946,986 + PFR28_00875 0.83 +0.6
947,146 - +0.6
947,184 - +0.7
947,407 + -1.3
947,466 + +1.1
947,466 + -1.2
947,474 + +0.1
947,564 + +0.8
947,564 + -0.6
947,564 + -0.7
947,564 + +1.1
947,564 + +0.3
947,565 - -0.8
947,565 - -0.6
947,565 - +0.3
947,576 + +1.7
947,577 - PFR28_00876 0.10 -0.9
947,585 + PFR28_00876 0.16 -1.9
947,585 + PFR28_00876 0.16 -0.8
947,585 + PFR28_00876 0.16 +0.1
947,586 - PFR28_00876 0.16 +1.1
947,632 - PFR28_00876 0.46 -2.9
947,698 + +0.6
947,698 + +0.0
947,698 + +0.0
947,698 + +2.4
947,698 + +2.2
947,699 - -0.7
947,699 - -2.7
947,702 + +0.5
947,702 + -1.0
947,702 + -0.0
947,702 + +0.8
947,702 + -0.6
947,703 - -0.4
947,703 - -0.0
947,703 - +0.2
947,809 + -0.3
947,838 + +1.1
948,002 + +0.1
948,030 + -3.6
948,030 + -0.7
948,030 + +1.0
948,030 + +0.5
948,031 - -1.2
948,031 - -0.4
948,031 - -0.3
948,031 - -1.6
948,031 - -2.0
948,031 - -0.0
948,031 - +0.3
948,062 + +0.5
948,104 + +0.7
948,105 - -1.2
948,291 + PFR28_00877 0.23 +0.8
948,291 + PFR28_00877 0.23 +1.4
948,291 + PFR28_00877 0.23 +0.7
948,292 - PFR28_00877 0.23 -2.1
948,292 - PFR28_00877 0.23 +0.5
948,292 - PFR28_00877 0.23 -0.1
948,476 - PFR28_00877 0.45 -2.1
948,552 + PFR28_00877 0.55 +0.5
948,552 + PFR28_00877 0.55 +0.2
948,552 + PFR28_00877 0.55 -0.8
948,552 + PFR28_00877 0.55 -1.7
948,552 + PFR28_00877 0.55 +0.4
948,552 + PFR28_00877 0.55 -2.2
948,552 + PFR28_00877 0.55 -0.6
948,552 + PFR28_00877 0.55 +2.0
948,552 + PFR28_00877 0.55 -0.0
948,553 - PFR28_00877 0.55 -2.4
948,553 - PFR28_00877 0.55 +1.1
948,553 - PFR28_00877 0.55 -0.2
948,553 - PFR28_00877 0.55 -0.7
948,553 - PFR28_00877 0.55 -0.4

Or see this region's nucleotide sequence