Strain Fitness in Pseudomonas sp. RS175 around PFR28_00695

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00694 and PFR28_00695 are separated by 237 nucleotidesPFR28_00695 and PFR28_00696 are separated by 32 nucleotides PFR28_00694: PFR28_00694 - Beta-barrel assembly-enhancing protease, at 737,169 to 738,602 _00694 PFR28_00695: PFR28_00695 - Sulfur carrier protein TusA, at 738,840 to 739,079 _00695 PFR28_00696: PFR28_00696 - hypothetical protein, at 739,112 to 740,182 _00696 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 738.241 kb on + strand, within PFR28_00694at 738.388 kb on + strand, within PFR28_00694at 738.388 kb on + strand, within PFR28_00694at 738.388 kb on + strand, within PFR28_00694at 738.389 kb on - strand, within PFR28_00694at 738.389 kb on - strand, within PFR28_00694at 738.389 kb on - strand, within PFR28_00694at 738.389 kb on - strand, within PFR28_00694at 738.389 kb on - strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.406 kb on + strand, within PFR28_00694at 738.407 kb on - strand, within PFR28_00694at 738.407 kb on - strand, within PFR28_00694at 738.407 kb on - strand, within PFR28_00694at 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.614 kb on + strandat 738.615 kb on - strandat 738.615 kb on - strandat 738.615 kb on - strandat 738.630 kb on + strandat 738.631 kb on - strandat 738.635 kb on + strandat 738.635 kb on + strandat 738.635 kb on + strandat 738.662 kb on + strandat 738.663 kb on - strandat 738.733 kb on + strandat 738.733 kb on + strandat 738.733 kb on + strandat 738.733 kb on + strandat 738.733 kb on + strandat 738.733 kb on + strandat 738.734 kb on - strandat 738.734 kb on - strandat 738.734 kb on - strandat 738.734 kb on - strandat 738.742 kb on + strandat 738.742 kb on + strandat 738.742 kb on + strandat 738.742 kb on + strandat 738.743 kb on - strandat 738.853 kb on + strandat 739.019 kb on + strand, within PFR28_00695at 739.020 kb on - strand, within PFR28_00695at 739.020 kb on - strand, within PFR28_00695at 739.020 kb on - strand, within PFR28_00695at 739.100 kb on + strandat 739.100 kb on + strandat 739.100 kb on + strandat 739.100 kb on + strandat 739.101 kb on - strandat 739.101 kb on - strandat 739.101 kb on - strandat 739.125 kb on + strandat 739.125 kb on + strandat 739.126 kb on - strandat 739.126 kb on - strandat 739.126 kb on - strandat 739.126 kb on - strandat 739.146 kb on - strandat 739.185 kb on + strandat 739.186 kb on - strandat 739.198 kb on + strandat 739.329 kb on + strand, within PFR28_00696at 739.329 kb on + strand, within PFR28_00696at 739.330 kb on - strand, within PFR28_00696at 739.330 kb on - strand, within PFR28_00696at 739.330 kb on - strand, within PFR28_00696at 739.359 kb on + strand, within PFR28_00696at 739.360 kb on - strand, within PFR28_00696at 739.604 kb on + strand, within PFR28_00696at 739.705 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.745 kb on + strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.746 kb on - strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.793 kb on + strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.794 kb on - strand, within PFR28_00696at 739.823 kb on + strand, within PFR28_00696at 739.823 kb on + strand, within PFR28_00696at 739.824 kb on - strand, within PFR28_00696at 739.871 kb on + strand, within PFR28_00696at 739.871 kb on + strand, within PFR28_00696at 739.872 kb on - strand, within PFR28_00696at 739.872 kb on - strand, within PFR28_00696at 739.872 kb on - strand, within PFR28_00696at 739.949 kb on + strand, within PFR28_00696at 739.949 kb on + strand, within PFR28_00696at 739.949 kb on + strand, within PFR28_00696at 739.950 kb on - strand, within PFR28_00696at 739.964 kb on + strand, within PFR28_00696

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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738,241 + PFR28_00694 0.75 +1.2
738,388 + PFR28_00694 0.85 -0.5
738,388 + PFR28_00694 0.85 -0.4
738,388 + PFR28_00694 0.85 -0.7
738,389 - PFR28_00694 0.85 +3.0
738,389 - PFR28_00694 0.85 -2.2
738,389 - PFR28_00694 0.85 +1.8
738,389 - PFR28_00694 0.85 -3.0
738,389 - PFR28_00694 0.85 -2.0
738,406 + PFR28_00694 0.86 -0.7
738,406 + PFR28_00694 0.86 +1.4
738,406 + PFR28_00694 0.86 -0.9
738,406 + PFR28_00694 0.86 +1.3
738,406 + PFR28_00694 0.86 -1.7
738,406 + PFR28_00694 0.86 -1.4
738,406 + PFR28_00694 0.86 -1.9
738,406 + PFR28_00694 0.86 -0.0
738,407 - PFR28_00694 0.86 +0.1
738,407 - PFR28_00694 0.86 +0.8
738,407 - PFR28_00694 0.86 -1.0
738,614 + +0.9
738,614 + -0.6
738,614 + -0.3
738,614 + +0.2
738,614 + -1.8
738,614 + -0.2
738,614 + -0.2
738,614 + -1.7
738,614 + -0.5
738,614 + -0.1
738,615 - -0.3
738,615 - +0.6
738,615 - -0.4
738,630 + +1.0
738,631 - +2.5
738,635 + -0.2
738,635 + -0.2
738,635 + -1.0
738,662 + +0.1
738,663 - +1.2
738,733 + -2.0
738,733 + -0.6
738,733 + +0.6
738,733 + -0.7
738,733 + +0.4
738,733 + +0.8
738,734 - +0.9
738,734 - +0.2
738,734 - +0.2
738,734 - -0.3
738,742 + -0.4
738,742 + +0.2
738,742 + -0.3
738,742 + -0.9
738,743 - +0.9
738,853 + -2.2
739,019 + PFR28_00695 0.75 -3.0
739,020 - PFR28_00695 0.75 +0.3
739,020 - PFR28_00695 0.75 -2.1
739,020 - PFR28_00695 0.75 -2.1
739,100 + -0.3
739,100 + +0.6
739,100 + +0.4
739,100 + -0.3
739,101 - -2.6
739,101 - -1.1
739,101 - -0.7
739,125 + -1.0
739,125 + -2.2
739,126 - +0.2
739,126 - -0.3
739,126 - -1.2
739,126 - +1.1
739,146 - +0.1
739,185 + +0.4
739,186 - -0.4
739,198 + -0.6
739,329 + PFR28_00696 0.20 -1.7
739,329 + PFR28_00696 0.20 +0.8
739,330 - PFR28_00696 0.20 -0.4
739,330 - PFR28_00696 0.20 -2.1
739,330 - PFR28_00696 0.20 +0.9
739,359 + PFR28_00696 0.23 +0.5
739,360 - PFR28_00696 0.23 -0.4
739,604 + PFR28_00696 0.46 +0.1
739,705 + PFR28_00696 0.55 -1.9
739,745 + PFR28_00696 0.59 +0.2
739,745 + PFR28_00696 0.59 -1.2
739,745 + PFR28_00696 0.59 -0.2
739,745 + PFR28_00696 0.59 +1.6
739,745 + PFR28_00696 0.59 -0.2
739,745 + PFR28_00696 0.59 -0.3
739,746 - PFR28_00696 0.59 +1.1
739,746 - PFR28_00696 0.59 +0.9
739,746 - PFR28_00696 0.59 -1.5
739,746 - PFR28_00696 0.59 +0.1
739,746 - PFR28_00696 0.59 -1.9
739,746 - PFR28_00696 0.59 -0.5
739,746 - PFR28_00696 0.59 +0.1
739,746 - PFR28_00696 0.59 -1.0
739,793 + PFR28_00696 0.64 +0.8
739,793 + PFR28_00696 0.64 +0.8
739,793 + PFR28_00696 0.64 +0.5
739,793 + PFR28_00696 0.64 -0.4
739,793 + PFR28_00696 0.64 +0.3
739,793 + PFR28_00696 0.64 -0.2
739,794 - PFR28_00696 0.64 +0.4
739,794 - PFR28_00696 0.64 +0.4
739,794 - PFR28_00696 0.64 -0.0
739,794 - PFR28_00696 0.64 +0.6
739,794 - PFR28_00696 0.64 -3.3
739,794 - PFR28_00696 0.64 +0.8
739,823 + PFR28_00696 0.66 +1.0
739,823 + PFR28_00696 0.66 +0.7
739,824 - PFR28_00696 0.66 -1.2
739,871 + PFR28_00696 0.71 -0.3
739,871 + PFR28_00696 0.71 -0.4
739,872 - PFR28_00696 0.71 -1.0
739,872 - PFR28_00696 0.71 +0.7
739,872 - PFR28_00696 0.71 -0.5
739,949 + PFR28_00696 0.78 -1.3
739,949 + PFR28_00696 0.78 +0.1
739,949 + PFR28_00696 0.78 -0.9
739,950 - PFR28_00696 0.78 -1.0
739,964 + PFR28_00696 0.80 +1.6

Or see this region's nucleotide sequence