Strain Fitness in Pseudomonas sp. RS175 around PFR28_00451

Experiment: L-Phenylalanine carbon 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00450 and PFR28_00451 are separated by 87 nucleotidesPFR28_00451 and PFR28_00452 overlap by 4 nucleotidesPFR28_00452 and PFR28_00453 overlap by 1 nucleotides PFR28_00450: PFR28_00450 - hypothetical protein, at 488,912 to 489,928 _00450 PFR28_00451: PFR28_00451 - hypothetical protein, at 490,016 to 490,582 _00451 PFR28_00452: PFR28_00452 - hypothetical protein, at 490,579 to 490,761 _00452 PFR28_00453: PFR28_00453 - hypothetical protein, at 490,761 to 492,257 _00453 Position (kb) 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 489.090 kb on + strand, within PFR28_00450at 489.407 kb on + strand, within PFR28_00450at 489.408 kb on - strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.438 kb on + strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.439 kb on - strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.440 kb on + strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.441 kb on - strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.444 kb on + strand, within PFR28_00450at 489.445 kb on - strand, within PFR28_00450at 489.445 kb on - strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.498 kb on + strand, within PFR28_00450at 489.499 kb on - strand, within PFR28_00450at 489.499 kb on - strand, within PFR28_00450at 489.885 kb on - strandat 489.960 kb on - strandat 490.122 kb on - strand, within PFR28_00451at 490.122 kb on - strand, within PFR28_00451at 490.310 kb on + strand, within PFR28_00451at 490.325 kb on + strand, within PFR28_00451at 490.573 kb on - strandat 490.719 kb on + strand, within PFR28_00452at 490.720 kb on - strand, within PFR28_00452at 490.782 kb on - strandat 490.812 kb on + strandat 490.986 kb on + strand, within PFR28_00453at 491.118 kb on + strand, within PFR28_00453at 491.118 kb on + strand, within PFR28_00453at 491.118 kb on + strand, within PFR28_00453at 491.119 kb on - strand, within PFR28_00453at 491.119 kb on - strand, within PFR28_00453at 491.119 kb on - strand, within PFR28_00453at 491.119 kb on - strand, within PFR28_00453at 491.387 kb on + strand, within PFR28_00453at 491.547 kb on + strand, within PFR28_00453at 491.547 kb on + strand, within PFR28_00453at 491.547 kb on + strand, within PFR28_00453at 491.548 kb on - strand, within PFR28_00453at 491.548 kb on - strand, within PFR28_00453

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM
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489,090 + PFR28_00450 0.18 +0.4
489,407 + PFR28_00450 0.49 -2.5
489,408 - PFR28_00450 0.49 +0.0
489,438 + PFR28_00450 0.52 +1.2
489,438 + PFR28_00450 0.52 +0.3
489,438 + PFR28_00450 0.52 -1.5
489,439 - PFR28_00450 0.52 -2.2
489,439 - PFR28_00450 0.52 -0.1
489,439 - PFR28_00450 0.52 -0.7
489,440 + PFR28_00450 0.52 +1.1
489,440 + PFR28_00450 0.52 -3.7
489,440 + PFR28_00450 0.52 +0.6
489,440 + PFR28_00450 0.52 +0.5
489,440 + PFR28_00450 0.52 -0.6
489,440 + PFR28_00450 0.52 +1.1
489,440 + PFR28_00450 0.52 -0.5
489,440 + PFR28_00450 0.52 +0.6
489,440 + PFR28_00450 0.52 +0.6
489,440 + PFR28_00450 0.52 +0.2
489,440 + PFR28_00450 0.52 +1.4
489,440 + PFR28_00450 0.52 -1.2
489,440 + PFR28_00450 0.52 -0.9
489,440 + PFR28_00450 0.52 -0.2
489,441 - PFR28_00450 0.52 -2.5
489,441 - PFR28_00450 0.52 -0.7
489,441 - PFR28_00450 0.52 -1.4
489,441 - PFR28_00450 0.52 -1.3
489,441 - PFR28_00450 0.52 -0.7
489,441 - PFR28_00450 0.52 +0.1
489,441 - PFR28_00450 0.52 +0.4
489,441 - PFR28_00450 0.52 +0.5
489,441 - PFR28_00450 0.52 -0.1
489,441 - PFR28_00450 0.52 -0.1
489,441 - PFR28_00450 0.52 +1.4
489,441 - PFR28_00450 0.52 -0.4
489,441 - PFR28_00450 0.52 -0.5
489,441 - PFR28_00450 0.52 +0.5
489,441 - PFR28_00450 0.52 -0.8
489,444 + PFR28_00450 0.52 +3.1
489,444 + PFR28_00450 0.52 -0.4
489,444 + PFR28_00450 0.52 +0.7
489,444 + PFR28_00450 0.52 +0.8
489,444 + PFR28_00450 0.52 +0.0
489,445 - PFR28_00450 0.52 -0.8
489,445 - PFR28_00450 0.52 -0.8
489,498 + PFR28_00450 0.58 +0.6
489,498 + PFR28_00450 0.58 -1.0
489,498 + PFR28_00450 0.58 -0.7
489,498 + PFR28_00450 0.58 +2.2
489,499 - PFR28_00450 0.58 +0.0
489,499 - PFR28_00450 0.58 +0.6
489,885 - +1.0
489,960 - -0.0
490,122 - PFR28_00451 0.19 -2.1
490,122 - PFR28_00451 0.19 -2.2
490,310 + PFR28_00451 0.52 -2.2
490,325 + PFR28_00451 0.54 -0.2
490,573 - -0.6
490,719 + PFR28_00452 0.77 +1.7
490,720 - PFR28_00452 0.77 -0.6
490,782 - +0.4
490,812 + -0.9
490,986 + PFR28_00453 0.15 -2.5
491,118 + PFR28_00453 0.24 +0.3
491,118 + PFR28_00453 0.24 -0.1
491,118 + PFR28_00453 0.24 -0.1
491,119 - PFR28_00453 0.24 +0.9
491,119 - PFR28_00453 0.24 +0.6
491,119 - PFR28_00453 0.24 -0.7
491,119 - PFR28_00453 0.24 -0.4
491,387 + PFR28_00453 0.42 -0.2
491,547 + PFR28_00453 0.53 -0.3
491,547 + PFR28_00453 0.53 -0.5
491,547 + PFR28_00453 0.53 +3.2
491,548 - PFR28_00453 0.53 -1.3
491,548 - PFR28_00453 0.53 +0.7

Or see this region's nucleotide sequence