Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00341 and PFR28_00342 are separated by 373 nucleotides PFR28_00342 and PFR28_00343 are separated by 158 nucleotides
PFR28_00341: PFR28_00341 - Glucans biosynthesis protein D, at 372,283 to 373,908
_00341
PFR28_00342: PFR28_00342 - hypothetical protein, at 374,282 to 374,467
_00342
PFR28_00343: PFR28_00343 - Gamma-aminobutyraldehyde dehydrogenase, at 374,626 to 376,050
_00343
Position (kb) 374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.313 kb on + strand, within PFR28_00341 at 373.314 kb on - strand, within PFR28_00341 at 373.314 kb on - strand, within PFR28_00341 at 373.318 kb on - strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.379 kb on + strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.380 kb on - strand, within PFR28_00341 at 373.499 kb on + strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.500 kb on - strand, within PFR28_00341 at 373.722 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.730 kb on + strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.731 kb on - strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.734 kb on + strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.735 kb on - strand, within PFR28_00341 at 373.862 kb on + strand at 373.863 kb on - strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.899 kb on + strand at 373.900 kb on - strand at 373.900 kb on - strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.908 kb on + strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.909 kb on - strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.912 kb on + strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.913 kb on - strand at 373.920 kb on + strand at 373.921 kb on - strand at 373.964 kb on - strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.004 kb on + strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.005 kb on - strand at 374.060 kb on + strand at 374.060 kb on + strand at 374.061 kb on - strand at 374.108 kb on + strand at 374.114 kb on + strand at 374.114 kb on + strand at 374.114 kb on + strand at 374.115 kb on - strand at 374.151 kb on + strand at 374.152 kb on - strand at 374.155 kb on + strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.156 kb on - strand at 374.160 kb on + strand at 374.179 kb on + strand at 374.180 kb on - strand at 374.192 kb on + strand at 374.192 kb on + strand at 374.192 kb on + strand at 374.199 kb on - strand at 374.252 kb on - strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.267 kb on - strand at 374.429 kb on + strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.430 kb on - strand, within PFR28_00342 at 374.465 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.503 kb on + strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.504 kb on - strand at 374.506 kb on - strand at 374.506 kb on - strand at 374.653 kb on + strand at 374.653 kb on + strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.654 kb on - strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.660 kb on + strand at 374.661 kb on - strand at 374.661 kb on - strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.675 kb on + strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.676 kb on - strand at 374.752 kb on - strand at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.771 kb on + strand, within PFR28_00343 at 374.772 kb on - strand, within PFR28_00343 at 374.821 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.125 kb on + strand, within PFR28_00343 at 375.126 kb on - strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.191 kb on + strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.192 kb on - strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.230 kb on + strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343 at 375.231 kb on - strand, within PFR28_00343
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 373,313 + PFR28_00341 0.63 +0.4 373,314 - PFR28_00341 0.63 -0.6 373,314 - PFR28_00341 0.63 +1.9 373,318 - PFR28_00341 0.64 +0.8 373,379 + PFR28_00341 0.67 -1.0 373,379 + PFR28_00341 0.67 -0.6 373,379 + PFR28_00341 0.67 -0.9 373,379 + PFR28_00341 0.67 +0.0 373,379 + PFR28_00341 0.67 -0.3 373,380 - PFR28_00341 0.67 -0.8 373,380 - PFR28_00341 0.67 +0.7 373,380 - PFR28_00341 0.67 +0.9 373,499 + PFR28_00341 0.75 -3.5 373,500 - PFR28_00341 0.75 -1.0 373,500 - PFR28_00341 0.75 -1.2 373,500 - PFR28_00341 0.75 +0.5 373,722 + PFR28_00341 0.88 +2.0 373,730 + PFR28_00341 0.89 +0.1 373,730 + PFR28_00341 0.89 +1.2 373,730 + PFR28_00341 0.89 +0.7 373,730 + PFR28_00341 0.89 -0.7 373,730 + PFR28_00341 0.89 -2.6 373,730 + PFR28_00341 0.89 +0.7 373,730 + PFR28_00341 0.89 -0.7 373,730 + PFR28_00341 0.89 +0.9 373,730 + PFR28_00341 0.89 +0.1 373,730 + PFR28_00341 0.89 -0.7 373,730 + PFR28_00341 0.89 +0.5 373,730 + PFR28_00341 0.89 -3.0 373,730 + PFR28_00341 0.89 -0.5 373,731 - PFR28_00341 0.89 -0.7 373,731 - PFR28_00341 0.89 -1.0 373,731 - PFR28_00341 0.89 -2.5 373,731 - PFR28_00341 0.89 +0.0 373,731 - PFR28_00341 0.89 -0.2 373,731 - PFR28_00341 0.89 -0.3 373,731 - PFR28_00341 0.89 -0.4 373,731 - PFR28_00341 0.89 -0.2 373,731 - PFR28_00341 0.89 +0.4 373,734 + PFR28_00341 0.89 -0.7 373,734 + PFR28_00341 0.89 +0.8 373,734 + PFR28_00341 0.89 +1.4 373,734 + PFR28_00341 0.89 -0.9 373,734 + PFR28_00341 0.89 -0.7 373,734 + PFR28_00341 0.89 -0.6 373,734 + PFR28_00341 0.89 -0.0 373,734 + PFR28_00341 0.89 -1.1 373,734 + PFR28_00341 0.89 -0.1 373,734 + PFR28_00341 0.89 -0.2 373,734 + PFR28_00341 0.89 -1.4 373,734 + PFR28_00341 0.89 +0.3 373,735 - PFR28_00341 0.89 -1.0 373,735 - PFR28_00341 0.89 -0.6 373,735 - PFR28_00341 0.89 +0.2 373,735 - PFR28_00341 0.89 -1.6 373,735 - PFR28_00341 0.89 -1.9 373,735 - PFR28_00341 0.89 +1.0 373,735 - PFR28_00341 0.89 +0.4 373,735 - PFR28_00341 0.89 -0.4 373,735 - PFR28_00341 0.89 +0.2 373,735 - PFR28_00341 0.89 -0.4 373,735 - PFR28_00341 0.89 +0.0 373,735 - PFR28_00341 0.89 +0.3 373,862 + -1.0 373,863 - +0.2 373,899 + -2.2 373,899 + -0.6 373,899 + -1.6 373,899 + -1.0 373,900 - -0.5 373,900 - -1.8 373,908 + +0.6 373,908 + +0.3 373,908 + -2.1 373,908 + -1.6 373,908 + -1.0 373,908 + -2.2 373,909 - -0.6 373,909 - -1.7 373,909 - -0.7 373,909 - +0.3 373,912 + -1.1 373,912 + -0.2 373,912 + -0.4 373,912 + -0.6 373,912 + -0.3 373,912 + -1.2 373,912 + +0.7 373,912 + +1.9 373,912 + -0.7 373,912 + +0.3 373,912 + -0.1 373,912 + +2.6 373,912 + -0.0 373,912 + +0.2 373,912 + -0.2 373,912 + -1.0 373,913 - -0.6 373,913 - +0.1 373,913 - +0.0 373,913 - -0.0 373,913 - -0.2 373,913 - -1.0 373,913 - -0.8 373,920 + -1.0 373,921 - +0.0 373,964 - -1.3 374,004 + -1.8 374,004 + -0.9 374,004 + -0.2 374,004 + -0.4 374,005 - +1.6 374,005 - +0.6 374,005 - -0.8 374,005 - +0.5 374,060 + -3.1 374,060 + -0.7 374,061 - -0.2 374,108 + -2.0 374,114 + +1.4 374,114 + +0.2 374,114 + -0.1 374,115 - +0.2 374,151 + +0.0 374,152 - +0.6 374,155 + -0.8 374,156 - +0.5 374,156 - +0.9 374,156 - +1.5 374,156 - -0.4 374,160 + +0.2 374,179 + -0.2 374,180 - +0.0 374,192 + +1.0 374,192 + +0.6 374,192 + -0.4 374,199 - -0.9 374,252 - +0.7 374,266 + +0.4 374,266 + +0.2 374,266 + +2.3 374,266 + +0.5 374,266 + +0.0 374,267 - -0.4 374,267 - +0.0 374,267 - -1.6 374,267 - +0.2 374,267 - +0.6 374,267 - -2.7 374,267 - +0.8 374,429 + PFR28_00342 0.79 -1.4 374,430 - PFR28_00342 0.80 -0.3 374,430 - PFR28_00342 0.80 -1.0 374,430 - PFR28_00342 0.80 -2.2 374,430 - PFR28_00342 0.80 +1.6 374,430 - PFR28_00342 0.80 -0.1 374,430 - PFR28_00342 0.80 -1.1 374,465 + +0.2 374,503 + -0.9 374,503 + +0.4 374,503 + +0.4 374,503 + +1.0 374,503 + +0.9 374,503 + -0.2 374,503 + +0.1 374,503 + -1.9 374,503 + +0.7 374,504 - -0.5 374,504 - -0.5 374,504 - +0.5 374,504 - +0.2 374,504 - -1.2 374,504 - +0.6 374,506 - +1.0 374,506 - -1.4 374,653 + -0.8 374,653 + +0.2 374,654 - -1.1 374,654 - -0.2 374,654 - +0.2 374,654 - -0.3 374,660 + +1.6 374,660 + +0.8 374,660 + +0.3 374,660 + -3.1 374,661 - +0.9 374,661 - -0.4 374,675 + +0.2 374,675 + -1.6 374,675 + -0.1 374,675 + +0.2 374,675 + -1.0 374,675 + -0.2 374,676 - +1.2 374,676 - -0.2 374,676 - -0.4 374,676 - -2.2 374,676 - -0.4 374,676 - -0.6 374,676 - -0.2 374,676 - -0.2 374,676 - -2.4 374,676 - -0.5 374,676 - -0.0 374,752 - +0.2 374,771 + PFR28_00343 0.10 +2.0 374,771 + PFR28_00343 0.10 +0.6 374,771 + PFR28_00343 0.10 +0.1 374,771 + PFR28_00343 0.10 -0.2 374,772 - PFR28_00343 0.10 +0.3 374,821 + PFR28_00343 0.14 +1.6 375,125 + PFR28_00343 0.35 -1.2 375,125 + PFR28_00343 0.35 -3.5 375,125 + PFR28_00343 0.35 -2.0 375,126 - PFR28_00343 0.35 -0.8 375,191 + PFR28_00343 0.40 -0.1 375,191 + PFR28_00343 0.40 -1.8 375,191 + PFR28_00343 0.40 -0.7 375,191 + PFR28_00343 0.40 -1.4 375,191 + PFR28_00343 0.40 +0.6 375,191 + PFR28_00343 0.40 +0.7 375,192 - PFR28_00343 0.40 -0.2 375,192 - PFR28_00343 0.40 +0.9 375,192 - PFR28_00343 0.40 -2.5 375,192 - PFR28_00343 0.40 +0.0 375,192 - PFR28_00343 0.40 -0.7 375,192 - PFR28_00343 0.40 +0.0 375,230 + PFR28_00343 0.42 +1.3 375,230 + PFR28_00343 0.42 -0.1 375,230 + PFR28_00343 0.42 -1.4 375,230 + PFR28_00343 0.42 -0.4 375,230 + PFR28_00343 0.42 -2.3 375,231 - PFR28_00343 0.42 -0.4 375,231 - PFR28_00343 0.42 +1.1 375,231 - PFR28_00343 0.42 +1.0 375,231 - PFR28_00343 0.42 -0.3
Or see this region's nucleotide sequence