Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00206 and PFR28_00207 are separated by 0 nucleotides PFR28_00207 and PFR28_00208 are separated by 19 nucleotides PFR28_00208 and PFR28_00209 are separated by 175 nucleotides
PFR28_00206: PFR28_00206 - 'Dihydroneopterin triphosphate 2'-epimerase' transl_table=11, at 231,394 to 231,774
_00206
PFR28_00207: PFR28_00207 - GTP cyclohydrolase 1, at 231,775 to 232,335
_00207
PFR28_00208: PFR28_00208 - Dihydromonapterin reductase, at 232,355 to 233,065
_00208
PFR28_00209: PFR28_00209 - hypothetical protein, at 233,241 to 234,200
_00209
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 231.372 kb on + strand at 231.373 kb on - strand at 231.373 kb on - strand at 231.373 kb on - strand at 231.403 kb on - strand at 231.423 kb on + strand at 231.424 kb on - strand at 231.596 kb on + strand, within PFR28_00206 at 231.596 kb on + strand, within PFR28_00206 at 231.596 kb on + strand, within PFR28_00206 at 231.596 kb on + strand, within PFR28_00206 at 231.596 kb on + strand, within PFR28_00206 at 231.597 kb on - strand, within PFR28_00206 at 231.597 kb on - strand, within PFR28_00206 at 231.597 kb on - strand, within PFR28_00206 at 231.597 kb on - strand, within PFR28_00206 at 231.648 kb on - strand, within PFR28_00206 at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.776 kb on + strand at 231.777 kb on - strand at 231.777 kb on - strand at 231.855 kb on + strand, within PFR28_00207 at 231.855 kb on + strand, within PFR28_00207 at 231.855 kb on + strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 231.856 kb on - strand, within PFR28_00207 at 232.065 kb on + strand, within PFR28_00207 at 232.065 kb on + strand, within PFR28_00207 at 232.065 kb on + strand, within PFR28_00207 at 232.065 kb on + strand, within PFR28_00207 at 232.065 kb on + strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.066 kb on - strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.067 kb on + strand, within PFR28_00207 at 232.068 kb on - strand, within PFR28_00207 at 232.068 kb on - strand, within PFR28_00207 at 232.068 kb on - strand, within PFR28_00207 at 232.121 kb on + strand, within PFR28_00207 at 232.121 kb on + strand, within PFR28_00207 at 232.121 kb on + strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.122 kb on - strand, within PFR28_00207 at 232.223 kb on + strand, within PFR28_00207 at 232.224 kb on - strand, within PFR28_00207 at 232.224 kb on - strand, within PFR28_00207 at 232.224 kb on - strand, within PFR28_00207 at 232.224 kb on - strand, within PFR28_00207 at 232.356 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.404 kb on + strand at 232.405 kb on - strand at 232.405 kb on - strand at 232.405 kb on - strand at 232.405 kb on - strand at 232.405 kb on - strand at 232.422 kb on + strand at 232.422 kb on + strand at 232.438 kb on - strand, within PFR28_00208 at 232.438 kb on - strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.526 kb on + strand, within PFR28_00208 at 232.527 kb on - strand, within PFR28_00208 at 232.569 kb on + strand, within PFR28_00208 at 232.569 kb on + strand, within PFR28_00208 at 232.569 kb on + strand, within PFR28_00208 at 232.569 kb on + strand, within PFR28_00208 at 232.569 kb on + strand, within PFR28_00208 at 232.570 kb on - strand, within PFR28_00208 at 232.570 kb on - strand, within PFR28_00208 at 232.624 kb on - strand, within PFR28_00208 at 232.748 kb on + strand, within PFR28_00208 at 232.749 kb on - strand, within PFR28_00208 at 232.749 kb on - strand, within PFR28_00208 at 232.749 kb on - strand, within PFR28_00208 at 232.903 kb on - strand, within PFR28_00208 at 232.903 kb on - strand, within PFR28_00208 at 232.903 kb on - strand, within PFR28_00208 at 232.904 kb on + strand, within PFR28_00208 at 232.904 kb on + strand, within PFR28_00208 at 232.904 kb on + strand, within PFR28_00208 at 232.905 kb on - strand, within PFR28_00208 at 232.905 kb on - strand, within PFR28_00208 at 232.905 kb on - strand, within PFR28_00208 at 232.905 kb on - strand, within PFR28_00208 at 233.097 kb on + strand at 233.097 kb on + strand at 233.098 kb on - strand at 233.098 kb on - strand at 233.098 kb on - strand at 233.098 kb on - strand at 233.098 kb on - strand at 233.099 kb on + strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.119 kb on + strand at 233.119 kb on + strand at 233.119 kb on + strand at 233.119 kb on + strand at 233.120 kb on - strand at 233.120 kb on - strand at 233.123 kb on + strand at 233.124 kb on - strand at 233.124 kb on - strand at 233.124 kb on - strand at 233.160 kb on - strand at 233.160 kb on - strand at 233.187 kb on - strand at 233.193 kb on + strand at 233.194 kb on - strand at 233.194 kb on - strand at 233.202 kb on + strand at 233.207 kb on + strand at 233.208 kb on - strand at 233.208 kb on - strand at 233.208 kb on - strand at 233.208 kb on - strand at 233.248 kb on + strand at 233.249 kb on - strand at 233.261 kb on + strand at 233.262 kb on - strand at 233.262 kb on - strand at 233.262 kb on - strand at 233.269 kb on + strand at 233.270 kb on - strand at 233.323 kb on + strand at 233.323 kb on + strand at 233.376 kb on + strand, within PFR28_00209 at 233.377 kb on - strand, within PFR28_00209 at 233.421 kb on + strand, within PFR28_00209 at 233.421 kb on + strand, within PFR28_00209 at 233.421 kb on + strand, within PFR28_00209 at 233.421 kb on + strand, within PFR28_00209 at 233.421 kb on + strand, within PFR28_00209 at 233.422 kb on - strand, within PFR28_00209 at 233.571 kb on + strand, within PFR28_00209 at 233.572 kb on - strand, within PFR28_00209 at 233.572 kb on - strand, within PFR28_00209 at 233.572 kb on - strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.640 kb on + strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.641 kb on - strand, within PFR28_00209 at 233.650 kb on + strand, within PFR28_00209 at 233.650 kb on + strand, within PFR28_00209 at 233.650 kb on + strand, within PFR28_00209 at 233.651 kb on - strand, within PFR28_00209 at 233.677 kb on + strand, within PFR28_00209 at 233.677 kb on + strand, within PFR28_00209 at 233.678 kb on - strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.689 kb on + strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.690 kb on - strand, within PFR28_00209 at 233.760 kb on + strand, within PFR28_00209 at 233.760 kb on + strand, within PFR28_00209 at 233.872 kb on + strand, within PFR28_00209 at 233.873 kb on - strand, within PFR28_00209 at 233.873 kb on - strand, within PFR28_00209 at 233.873 kb on - strand, within PFR28_00209 at 233.989 kb on + strand, within PFR28_00209 at 233.989 kb on + strand, within PFR28_00209 at 233.990 kb on - strand, within PFR28_00209
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 231,372 + -0.2 231,373 - -0.5 231,373 - -0.4 231,373 - -0.7 231,403 - +2.7 231,423 + +1.2 231,424 - -0.6 231,596 + PFR28_00206 0.53 -1.8 231,596 + PFR28_00206 0.53 +0.3 231,596 + PFR28_00206 0.53 -0.9 231,596 + PFR28_00206 0.53 -0.4 231,596 + PFR28_00206 0.53 -0.5 231,597 - PFR28_00206 0.53 +0.7 231,597 - PFR28_00206 0.53 -0.5 231,597 - PFR28_00206 0.53 +0.6 231,597 - PFR28_00206 0.53 -0.7 231,648 - PFR28_00206 0.67 -0.5 231,776 + +0.8 231,776 + -1.7 231,776 + -0.8 231,776 + -0.7 231,776 + -0.6 231,776 + +1.4 231,776 + +0.3 231,776 + -0.9 231,776 + +0.9 231,777 - -0.4 231,777 - -2.1 231,855 + PFR28_00207 0.14 +0.4 231,855 + PFR28_00207 0.14 +1.1 231,855 + PFR28_00207 0.14 +0.6 231,856 - PFR28_00207 0.14 +0.1 231,856 - PFR28_00207 0.14 -1.4 231,856 - PFR28_00207 0.14 -1.0 231,856 - PFR28_00207 0.14 +0.1 231,856 - PFR28_00207 0.14 -0.1 231,856 - PFR28_00207 0.14 -0.8 232,065 + PFR28_00207 0.52 +0.5 232,065 + PFR28_00207 0.52 -0.4 232,065 + PFR28_00207 0.52 -1.2 232,065 + PFR28_00207 0.52 -0.7 232,065 + PFR28_00207 0.52 +0.6 232,066 - PFR28_00207 0.52 -0.4 232,066 - PFR28_00207 0.52 +1.5 232,066 - PFR28_00207 0.52 -1.8 232,066 - PFR28_00207 0.52 -0.2 232,066 - PFR28_00207 0.52 -1.6 232,066 - PFR28_00207 0.52 -1.7 232,066 - PFR28_00207 0.52 -0.4 232,066 - PFR28_00207 0.52 -2.1 232,066 - PFR28_00207 0.52 -0.2 232,066 - PFR28_00207 0.52 -1.3 232,066 - PFR28_00207 0.52 -0.6 232,066 - PFR28_00207 0.52 -0.3 232,067 + PFR28_00207 0.52 +0.6 232,067 + PFR28_00207 0.52 +0.3 232,067 + PFR28_00207 0.52 -0.8 232,067 + PFR28_00207 0.52 -0.5 232,067 + PFR28_00207 0.52 -0.7 232,067 + PFR28_00207 0.52 +0.2 232,067 + PFR28_00207 0.52 -0.9 232,067 + PFR28_00207 0.52 +0.2 232,068 - PFR28_00207 0.52 +0.3 232,068 - PFR28_00207 0.52 +0.1 232,068 - PFR28_00207 0.52 -2.9 232,121 + PFR28_00207 0.62 +0.1 232,121 + PFR28_00207 0.62 -0.5 232,121 + PFR28_00207 0.62 +1.1 232,122 - PFR28_00207 0.62 -4.1 232,122 - PFR28_00207 0.62 -0.2 232,122 - PFR28_00207 0.62 -1.8 232,122 - PFR28_00207 0.62 +0.1 232,122 - PFR28_00207 0.62 -4.3 232,122 - PFR28_00207 0.62 -0.8 232,223 + PFR28_00207 0.80 +0.9 232,224 - PFR28_00207 0.80 -1.2 232,224 - PFR28_00207 0.80 -1.2 232,224 - PFR28_00207 0.80 -1.0 232,224 - PFR28_00207 0.80 +1.6 232,356 + +0.5 232,404 + -0.3 232,404 + -1.9 232,404 + -0.8 232,404 + -0.7 232,404 + +0.6 232,404 + +0.1 232,404 + +1.2 232,404 + -1.7 232,405 - +0.8 232,405 - -1.3 232,405 - -0.7 232,405 - -0.8 232,405 - +0.3 232,422 + +0.3 232,422 + -1.5 232,438 - PFR28_00208 0.12 -3.3 232,438 - PFR28_00208 0.12 -2.4 232,526 + PFR28_00208 0.24 -0.1 232,526 + PFR28_00208 0.24 +1.0 232,526 + PFR28_00208 0.24 +0.2 232,526 + PFR28_00208 0.24 +1.0 232,526 + PFR28_00208 0.24 -0.6 232,526 + PFR28_00208 0.24 +0.9 232,527 - PFR28_00208 0.24 +0.1 232,569 + PFR28_00208 0.30 -1.5 232,569 + PFR28_00208 0.30 -1.3 232,569 + PFR28_00208 0.30 -0.1 232,569 + PFR28_00208 0.30 +0.8 232,569 + PFR28_00208 0.30 -1.1 232,570 - PFR28_00208 0.30 +0.4 232,570 - PFR28_00208 0.30 -2.6 232,624 - PFR28_00208 0.38 +1.1 232,748 + PFR28_00208 0.55 +1.0 232,749 - PFR28_00208 0.55 +1.5 232,749 - PFR28_00208 0.55 +0.0 232,749 - PFR28_00208 0.55 +0.3 232,903 - PFR28_00208 0.77 +1.1 232,903 - PFR28_00208 0.77 -0.4 232,903 - PFR28_00208 0.77 -2.7 232,904 + PFR28_00208 0.77 +0.2 232,904 + PFR28_00208 0.77 +0.2 232,904 + PFR28_00208 0.77 +0.2 232,905 - PFR28_00208 0.77 -2.4 232,905 - PFR28_00208 0.77 -2.2 232,905 - PFR28_00208 0.77 -0.0 232,905 - PFR28_00208 0.77 +1.6 233,097 + -0.0 233,097 + -0.6 233,098 - +1.1 233,098 - -0.4 233,098 - -2.9 233,098 - +0.1 233,098 - -0.6 233,099 + -0.8 233,100 - +2.9 233,100 - -0.0 233,119 + +0.6 233,119 + -0.5 233,119 + -0.2 233,119 + +1.6 233,120 - -0.3 233,120 - -0.2 233,123 + -0.6 233,124 - -1.8 233,124 - -2.4 233,124 - +0.7 233,160 - -0.7 233,160 - +0.7 233,187 - -1.4 233,193 + +0.6 233,194 - -0.4 233,194 - +0.5 233,202 + -0.3 233,207 + -0.5 233,208 - -1.4 233,208 - -0.3 233,208 - +0.1 233,208 - +0.5 233,248 + -0.7 233,249 - -1.1 233,261 + +0.1 233,262 - -0.8 233,262 - -1.4 233,262 - -0.9 233,269 + +0.6 233,270 - -1.0 233,323 + -0.6 233,323 + -0.4 233,376 + PFR28_00209 0.14 -1.8 233,377 - PFR28_00209 0.14 +0.4 233,421 + PFR28_00209 0.19 -0.4 233,421 + PFR28_00209 0.19 +0.6 233,421 + PFR28_00209 0.19 -0.0 233,421 + PFR28_00209 0.19 -0.9 233,421 + PFR28_00209 0.19 -0.6 233,422 - PFR28_00209 0.19 -1.5 233,571 + PFR28_00209 0.34 -1.1 233,572 - PFR28_00209 0.34 -2.6 233,572 - PFR28_00209 0.34 -0.7 233,572 - PFR28_00209 0.34 -1.1 233,640 + PFR28_00209 0.42 +0.7 233,640 + PFR28_00209 0.42 -1.8 233,640 + PFR28_00209 0.42 -2.4 233,640 + PFR28_00209 0.42 -0.2 233,640 + PFR28_00209 0.42 +0.6 233,640 + PFR28_00209 0.42 +0.4 233,641 - PFR28_00209 0.42 +1.3 233,641 - PFR28_00209 0.42 -0.1 233,641 - PFR28_00209 0.42 -0.6 233,641 - PFR28_00209 0.42 -0.7 233,641 - PFR28_00209 0.42 -0.9 233,641 - PFR28_00209 0.42 -1.7 233,641 - PFR28_00209 0.42 +0.1 233,650 + PFR28_00209 0.43 -3.5 233,650 + PFR28_00209 0.43 +0.8 233,650 + PFR28_00209 0.43 -0.5 233,651 - PFR28_00209 0.43 -1.1 233,677 + PFR28_00209 0.45 +1.1 233,677 + PFR28_00209 0.45 +0.6 233,678 - PFR28_00209 0.46 -0.4 233,689 + PFR28_00209 0.47 +0.8 233,689 + PFR28_00209 0.47 +0.4 233,689 + PFR28_00209 0.47 -0.1 233,689 + PFR28_00209 0.47 +0.3 233,689 + PFR28_00209 0.47 +0.7 233,689 + PFR28_00209 0.47 -0.8 233,689 + PFR28_00209 0.47 -2.2 233,689 + PFR28_00209 0.47 -1.9 233,689 + PFR28_00209 0.47 -0.3 233,690 - PFR28_00209 0.47 +0.0 233,690 - PFR28_00209 0.47 -1.2 233,690 - PFR28_00209 0.47 +0.4 233,690 - PFR28_00209 0.47 +0.0 233,690 - PFR28_00209 0.47 -0.4 233,690 - PFR28_00209 0.47 -0.7 233,690 - PFR28_00209 0.47 -3.2 233,760 + PFR28_00209 0.54 +1.1 233,760 + PFR28_00209 0.54 +0.0 233,872 + PFR28_00209 0.66 +0.5 233,873 - PFR28_00209 0.66 +1.1 233,873 - PFR28_00209 0.66 -0.0 233,873 - PFR28_00209 0.66 +0.2 233,989 + PFR28_00209 0.78 -0.4 233,989 + PFR28_00209 0.78 +0.1 233,990 - PFR28_00209 0.78 -0.4
Or see this region's nucleotide sequence