Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2646

Experiment: m.b. Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2644 and Echvi_2645 are separated by 98 nucleotidesEchvi_2645 and Echvi_2646 overlap by 11 nucleotidesEchvi_2646 and Echvi_2647 are separated by 290 nucleotidesEchvi_2647 and Echvi_2648 are separated by 6 nucleotides Echvi_2644: Echvi_2644 - hypothetical protein, at 3,133,175 to 3,133,744 _2644 Echvi_2645: Echvi_2645 - hypothetical protein, at 3,133,843 to 3,134,610 _2645 Echvi_2646: Echvi_2646 - hypothetical protein, at 3,134,600 to 3,134,938 _2646 Echvi_2647: Echvi_2647 - Helix-turn-helix., at 3,135,229 to 3,135,501 _2647 Echvi_2648: Echvi_2648 - Helix-turn-helix., at 3,135,508 to 3,135,927 _2648 Position (kb) 3134 3135Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3133.608 kb on + strand, within Echvi_2644at 3133.621 kb on - strand, within Echvi_2644at 3133.628 kb on - strand, within Echvi_2644at 3133.661 kb on + strand, within Echvi_2644at 3133.705 kb on + strandat 3133.708 kb on - strandat 3133.708 kb on - strandat 3133.746 kb on - strandat 3133.816 kb on - strandat 3133.850 kb on - strandat 3134.626 kb on + strandat 3134.627 kb on - strandat 3134.645 kb on + strand, within Echvi_2646at 3134.645 kb on + strand, within Echvi_2646at 3134.663 kb on - strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.672 kb on + strand, within Echvi_2646at 3134.681 kb on + strand, within Echvi_2646at 3134.681 kb on + strand, within Echvi_2646at 3134.682 kb on - strand, within Echvi_2646at 3134.684 kb on + strand, within Echvi_2646at 3134.685 kb on - strand, within Echvi_2646at 3134.685 kb on - strand, within Echvi_2646at 3134.687 kb on + strand, within Echvi_2646at 3134.699 kb on - strand, within Echvi_2646at 3134.768 kb on + strand, within Echvi_2646at 3134.768 kb on + strand, within Echvi_2646at 3134.790 kb on - strand, within Echvi_2646at 3134.792 kb on + strand, within Echvi_2646at 3134.792 kb on + strand, within Echvi_2646at 3134.804 kb on + strand, within Echvi_2646at 3134.807 kb on + strand, within Echvi_2646at 3134.815 kb on + strand, within Echvi_2646at 3134.816 kb on - strand, within Echvi_2646at 3134.818 kb on + strand, within Echvi_2646at 3134.819 kb on - strand, within Echvi_2646at 3134.819 kb on - strand, within Echvi_2646at 3134.830 kb on + strand, within Echvi_2646at 3134.837 kb on + strand, within Echvi_2646at 3134.887 kb on + strand, within Echvi_2646at 3134.888 kb on - strand, within Echvi_2646at 3134.902 kb on + strand, within Echvi_2646at 3134.912 kb on - strandat 3134.915 kb on + strandat 3134.929 kb on + strandat 3134.971 kb on - strandat 3134.971 kb on - strandat 3134.983 kb on - strandat 3134.999 kb on - strandat 3135.001 kb on - strandat 3135.093 kb on + strandat 3135.124 kb on + strandat 3135.199 kb on + strandat 3135.300 kb on + strand, within Echvi_2647at 3135.339 kb on + strand, within Echvi_2647at 3135.344 kb on + strand, within Echvi_2647at 3135.344 kb on + strand, within Echvi_2647at 3135.344 kb on + strand, within Echvi_2647at 3135.345 kb on - strand, within Echvi_2647at 3135.345 kb on - strand, within Echvi_2647at 3135.375 kb on + strand, within Echvi_2647at 3135.406 kb on + strand, within Echvi_2647at 3135.463 kb on - strand, within Echvi_2647at 3135.463 kb on - strand, within Echvi_2647at 3135.476 kb on - strandat 3135.485 kb on - strandat 3135.507 kb on - strandat 3135.510 kb on - strandat 3135.525 kb on + strandat 3135.577 kb on + strand, within Echvi_2648at 3135.586 kb on + strand, within Echvi_2648at 3135.621 kb on + strand, within Echvi_2648at 3135.621 kb on + strand, within Echvi_2648at 3135.622 kb on - strand, within Echvi_2648at 3135.655 kb on - strand, within Echvi_2648at 3135.673 kb on - strand, within Echvi_2648at 3135.686 kb on - strand, within Echvi_2648at 3135.717 kb on + strand, within Echvi_2648at 3135.717 kb on + strand, within Echvi_2648at 3135.717 kb on + strand, within Echvi_2648at 3135.727 kb on + strand, within Echvi_2648at 3135.727 kb on + strand, within Echvi_2648at 3135.746 kb on + strand, within Echvi_2648at 3135.757 kb on + strand, within Echvi_2648at 3135.830 kb on + strand, within Echvi_2648at 3135.846 kb on + strand, within Echvi_2648at 3135.846 kb on + strand, within Echvi_2648at 3135.846 kb on + strand, within Echvi_2648at 3135.847 kb on - strand, within Echvi_2648at 3135.847 kb on - strand, within Echvi_2648at 3135.850 kb on + strand, within Echvi_2648at 3135.850 kb on + strand, within Echvi_2648at 3135.850 kb on + strand, within Echvi_2648at 3135.855 kb on + strand, within Echvi_2648at 3135.856 kb on - strand, within Echvi_2648at 3135.863 kb on - strand, within Echvi_2648at 3135.866 kb on + strand, within Echvi_2648at 3135.867 kb on - strand, within Echvi_2648at 3135.867 kb on - strand, within Echvi_2648

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM
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3,133,608 + Echvi_2644 0.76 -0.4
3,133,621 - Echvi_2644 0.78 +0.7
3,133,628 - Echvi_2644 0.79 +0.1
3,133,661 + Echvi_2644 0.85 +0.8
3,133,705 + -0.2
3,133,708 - +0.2
3,133,708 - +0.4
3,133,746 - +0.4
3,133,816 - +0.1
3,133,850 - -0.2
3,134,626 + +0.2
3,134,627 - +0.3
3,134,645 + Echvi_2646 0.13 -0.5
3,134,645 + Echvi_2646 0.13 -0.2
3,134,663 - Echvi_2646 0.19 +0.0
3,134,672 + Echvi_2646 0.21 +1.5
3,134,672 + Echvi_2646 0.21 +4.4
3,134,672 + Echvi_2646 0.21 -0.4
3,134,681 + Echvi_2646 0.24 +0.0
3,134,681 + Echvi_2646 0.24 -0.2
3,134,682 - Echvi_2646 0.24 +0.8
3,134,684 + Echvi_2646 0.25 +0.3
3,134,685 - Echvi_2646 0.25 -0.0
3,134,685 - Echvi_2646 0.25 +0.1
3,134,687 + Echvi_2646 0.26 +0.2
3,134,699 - Echvi_2646 0.29 +0.8
3,134,768 + Echvi_2646 0.50 +0.1
3,134,768 + Echvi_2646 0.50 +0.6
3,134,790 - Echvi_2646 0.56 -0.0
3,134,792 + Echvi_2646 0.57 +0.9
3,134,792 + Echvi_2646 0.57 +0.3
3,134,804 + Echvi_2646 0.60 +0.8
3,134,807 + Echvi_2646 0.61 +1.0
3,134,815 + Echvi_2646 0.63 +0.4
3,134,816 - Echvi_2646 0.64 +0.3
3,134,818 + Echvi_2646 0.64 -0.6
3,134,819 - Echvi_2646 0.65 +0.9
3,134,819 - Echvi_2646 0.65 +0.6
3,134,830 + Echvi_2646 0.68 -0.0
3,134,837 + Echvi_2646 0.70 -0.9
3,134,887 + Echvi_2646 0.85 -0.3
3,134,888 - Echvi_2646 0.85 +0.2
3,134,902 + Echvi_2646 0.89 +1.5
3,134,912 - +0.6
3,134,915 + -0.5
3,134,929 + -0.5
3,134,971 - +0.6
3,134,971 - +0.6
3,134,983 - -1.6
3,134,999 - -0.6
3,135,001 - +0.1
3,135,093 + +0.9
3,135,124 + +0.1
3,135,199 + +0.4
3,135,300 + Echvi_2647 0.26 -0.5
3,135,339 + Echvi_2647 0.40 +0.3
3,135,344 + Echvi_2647 0.42 -0.3
3,135,344 + Echvi_2647 0.42 -0.5
3,135,344 + Echvi_2647 0.42 -0.0
3,135,345 - Echvi_2647 0.42 +0.1
3,135,345 - Echvi_2647 0.42 +0.1
3,135,375 + Echvi_2647 0.53 +0.7
3,135,406 + Echvi_2647 0.65 -0.9
3,135,463 - Echvi_2647 0.86 -0.3
3,135,463 - Echvi_2647 0.86 -1.1
3,135,476 - -1.8
3,135,485 - +0.8
3,135,507 - -0.8
3,135,510 - +0.2
3,135,525 + -0.5
3,135,577 + Echvi_2648 0.16 -0.6
3,135,586 + Echvi_2648 0.19 -0.3
3,135,621 + Echvi_2648 0.27 +0.1
3,135,621 + Echvi_2648 0.27 -0.0
3,135,622 - Echvi_2648 0.27 +0.3
3,135,655 - Echvi_2648 0.35 -1.5
3,135,673 - Echvi_2648 0.39 -1.5
3,135,686 - Echvi_2648 0.42 +0.1
3,135,717 + Echvi_2648 0.50 +0.7
3,135,717 + Echvi_2648 0.50 +1.0
3,135,717 + Echvi_2648 0.50 -0.6
3,135,727 + Echvi_2648 0.52 +1.1
3,135,727 + Echvi_2648 0.52 -1.3
3,135,746 + Echvi_2648 0.57 +0.2
3,135,757 + Echvi_2648 0.59 +1.0
3,135,830 + Echvi_2648 0.77 -0.4
3,135,846 + Echvi_2648 0.80 -0.3
3,135,846 + Echvi_2648 0.80 -1.6
3,135,846 + Echvi_2648 0.80 +1.2
3,135,847 - Echvi_2648 0.81 +1.0
3,135,847 - Echvi_2648 0.81 +0.2
3,135,850 + Echvi_2648 0.81 -1.1
3,135,850 + Echvi_2648 0.81 +0.5
3,135,850 + Echvi_2648 0.81 -1.2
3,135,855 + Echvi_2648 0.83 +0.6
3,135,856 - Echvi_2648 0.83 -0.4
3,135,863 - Echvi_2648 0.85 +0.0
3,135,866 + Echvi_2648 0.85 -0.4
3,135,867 - Echvi_2648 0.85 -0.1
3,135,867 - Echvi_2648 0.85 -1.5

Or see this region's nucleotide sequence