Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4289

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4288 and EX28DRAFT_4289 overlap by 4 nucleotidesEX28DRAFT_4289 and EX28DRAFT_4290 are separated by 46 nucleotides EX28DRAFT_4288: EX28DRAFT_4288 - ABC-type branched-chain amino acid transport system, permease component, at 91,864 to 93,141 _4288 EX28DRAFT_4289: EX28DRAFT_4289 - Branched-chain amino acid ABC-type transport system, permease components, at 93,138 to 94,064 _4289 EX28DRAFT_4290: EX28DRAFT_4290 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 94,111 to 95,220 _4290 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1 2 3at 92.348 kb on + strand, within EX28DRAFT_4288at 92.349 kb on - strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.378 kb on + strand, within EX28DRAFT_4288at 92.379 kb on - strand, within EX28DRAFT_4288at 92.663 kb on + strand, within EX28DRAFT_4288at 92.664 kb on - strand, within EX28DRAFT_4288at 92.666 kb on + strand, within EX28DRAFT_4288at 92.688 kb on + strand, within EX28DRAFT_4288at 92.705 kb on + strand, within EX28DRAFT_4288at 92.780 kb on + strand, within EX28DRAFT_4288at 92.780 kb on + strand, within EX28DRAFT_4288at 92.887 kb on - strand, within EX28DRAFT_4288at 92.998 kb on + strand, within EX28DRAFT_4288at 93.141 kb on + strandat 93.227 kb on + strandat 93.228 kb on - strandat 93.228 kb on - strandat 93.230 kb on - strandat 93.244 kb on + strand, within EX28DRAFT_4289at 93.367 kb on + strand, within EX28DRAFT_4289at 93.454 kb on - strand, within EX28DRAFT_4289at 93.569 kb on + strand, within EX28DRAFT_4289at 93.570 kb on - strand, within EX28DRAFT_4289at 93.570 kb on - strand, within EX28DRAFT_4289at 93.704 kb on - strand, within EX28DRAFT_4289at 93.899 kb on + strand, within EX28DRAFT_4289at 93.910 kb on + strand, within EX28DRAFT_4289at 93.910 kb on + strand, within EX28DRAFT_4289at 93.911 kb on - strand, within EX28DRAFT_4289at 93.911 kb on - strand, within EX28DRAFT_4289at 93.915 kb on - strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.925 kb on + strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.926 kb on - strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.927 kb on + strand, within EX28DRAFT_4289at 93.977 kb on + strandat 93.977 kb on + strandat 93.977 kb on + strandat 93.978 kb on - strandat 94.001 kb on - strandat 94.045 kb on + strandat 94.064 kb on + strandat 94.079 kb on - strandat 94.149 kb on + strandat 94.311 kb on - strand, within EX28DRAFT_4290at 94.326 kb on - strand, within EX28DRAFT_4290at 94.326 kb on - strand, within EX28DRAFT_4290at 94.544 kb on + strand, within EX28DRAFT_4290at 94.557 kb on - strand, within EX28DRAFT_4290at 94.559 kb on + strand, within EX28DRAFT_4290at 94.559 kb on + strand, within EX28DRAFT_4290at 94.760 kb on + strand, within EX28DRAFT_4290at 94.760 kb on + strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.761 kb on - strand, within EX28DRAFT_4290at 94.886 kb on + strand, within EX28DRAFT_4290at 94.887 kb on - strand, within EX28DRAFT_4290at 94.937 kb on + strand, within EX28DRAFT_4290at 95.006 kb on + strand, within EX28DRAFT_4290

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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92,348 + EX28DRAFT_4288 0.38 -0.8
92,349 - EX28DRAFT_4288 0.38 -0.4
92,378 + EX28DRAFT_4288 0.40 -0.3
92,378 + EX28DRAFT_4288 0.40 -0.0
92,378 + EX28DRAFT_4288 0.40 -0.1
92,378 + EX28DRAFT_4288 0.40 -0.0
92,379 - EX28DRAFT_4288 0.40 +0.2
92,663 + EX28DRAFT_4288 0.63 +1.0
92,664 - EX28DRAFT_4288 0.63 -0.2
92,666 + EX28DRAFT_4288 0.63 -0.5
92,688 + EX28DRAFT_4288 0.64 +0.4
92,705 + EX28DRAFT_4288 0.66 +3.5
92,780 + EX28DRAFT_4288 0.72 +0.0
92,780 + EX28DRAFT_4288 0.72 -0.2
92,887 - EX28DRAFT_4288 0.80 +0.3
92,998 + EX28DRAFT_4288 0.89 +0.2
93,141 + -0.6
93,227 + +0.1
93,228 - -0.1
93,228 - -0.5
93,230 - -0.1
93,244 + EX28DRAFT_4289 0.11 -0.6
93,367 + EX28DRAFT_4289 0.25 -0.1
93,454 - EX28DRAFT_4289 0.34 -0.2
93,569 + EX28DRAFT_4289 0.46 +0.1
93,570 - EX28DRAFT_4289 0.47 +0.7
93,570 - EX28DRAFT_4289 0.47 -0.4
93,704 - EX28DRAFT_4289 0.61 +0.9
93,899 + EX28DRAFT_4289 0.82 +1.0
93,910 + EX28DRAFT_4289 0.83 +0.3
93,910 + EX28DRAFT_4289 0.83 -0.5
93,911 - EX28DRAFT_4289 0.83 +0.1
93,911 - EX28DRAFT_4289 0.83 -0.0
93,915 - EX28DRAFT_4289 0.84 +1.0
93,925 + EX28DRAFT_4289 0.85 +0.4
93,925 + EX28DRAFT_4289 0.85 -0.7
93,925 + EX28DRAFT_4289 0.85 +1.7
93,925 + EX28DRAFT_4289 0.85 -0.5
93,925 + EX28DRAFT_4289 0.85 +0.3
93,925 + EX28DRAFT_4289 0.85 +0.5
93,925 + EX28DRAFT_4289 0.85 +0.8
93,926 - EX28DRAFT_4289 0.85 +0.3
93,926 - EX28DRAFT_4289 0.85 +0.5
93,926 - EX28DRAFT_4289 0.85 +0.4
93,926 - EX28DRAFT_4289 0.85 -1.9
93,926 - EX28DRAFT_4289 0.85 -0.6
93,927 + EX28DRAFT_4289 0.85 -0.3
93,927 + EX28DRAFT_4289 0.85 +0.0
93,927 + EX28DRAFT_4289 0.85 -0.4
93,927 + EX28DRAFT_4289 0.85 +0.0
93,977 + -0.7
93,977 + +2.0
93,977 + +0.2
93,978 - -0.5
94,001 - +0.8
94,045 + +1.2
94,064 + +0.5
94,079 - +0.0
94,149 + -0.9
94,311 - EX28DRAFT_4290 0.18 +0.2
94,326 - EX28DRAFT_4290 0.19 -0.2
94,326 - EX28DRAFT_4290 0.19 +0.6
94,544 + EX28DRAFT_4290 0.39 -0.1
94,557 - EX28DRAFT_4290 0.40 +0.9
94,559 + EX28DRAFT_4290 0.40 +0.1
94,559 + EX28DRAFT_4290 0.40 +0.1
94,760 + EX28DRAFT_4290 0.58 +0.8
94,760 + EX28DRAFT_4290 0.58 +1.4
94,761 - EX28DRAFT_4290 0.59 +0.2
94,761 - EX28DRAFT_4290 0.59 +1.2
94,886 + EX28DRAFT_4290 0.70 +0.6
94,887 - EX28DRAFT_4290 0.70 -0.1
94,937 + EX28DRAFT_4290 0.74 +0.2
95,006 + EX28DRAFT_4290 0.81 +0.2

Or see this region's nucleotide sequence