Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3967

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3966 and EX28DRAFT_3967 are separated by 82 nucleotidesEX28DRAFT_3967 and EX28DRAFT_3968 overlap by 11 nucleotidesEX28DRAFT_3968 and EX28DRAFT_3969 are separated by 92 nucleotides EX28DRAFT_3966: EX28DRAFT_3966 - D-serine ammonia-lyase (EC 4.3.1.18), at 174,553 to 175,839 _3966 EX28DRAFT_3967: EX28DRAFT_3967 - Domain of unknown function (DUF202), at 175,922 to 176,269 _3967 EX28DRAFT_3968: EX28DRAFT_3968 - Predicted membrane protein, at 176,259 to 176,606 _3968 EX28DRAFT_3969: EX28DRAFT_3969 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 176,699 to 178,021 _3969 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 174.922 kb on + strand, within EX28DRAFT_3966at 174.922 kb on + strand, within EX28DRAFT_3966at 174.922 kb on + strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.923 kb on - strand, within EX28DRAFT_3966at 174.989 kb on - strand, within EX28DRAFT_3966at 175.014 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.119 kb on + strand, within EX28DRAFT_3966at 175.120 kb on - strand, within EX28DRAFT_3966at 175.120 kb on - strand, within EX28DRAFT_3966at 175.370 kb on - strand, within EX28DRAFT_3966at 175.376 kb on - strand, within EX28DRAFT_3966at 175.502 kb on - strand, within EX28DRAFT_3966at 175.633 kb on + strand, within EX28DRAFT_3966at 175.658 kb on - strand, within EX28DRAFT_3966at 175.658 kb on - strand, within EX28DRAFT_3966at 175.820 kb on - strandat 175.820 kb on - strandat 175.838 kb on - strandat 175.838 kb on - strandat 175.841 kb on + strandat 175.842 kb on - strandat 175.873 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 175.891 kb on + strandat 176.003 kb on - strand, within EX28DRAFT_3967at 176.078 kb on + strand, within EX28DRAFT_3967at 176.270 kb on - strandat 176.339 kb on + strand, within EX28DRAFT_3968at 176.341 kb on + strand, within EX28DRAFT_3968at 176.648 kb on + strandat 176.648 kb on + strandat 176.649 kb on - strandat 176.718 kb on + strandat 176.719 kb on - strandat 176.959 kb on + strand, within EX28DRAFT_3969at 177.060 kb on + strand, within EX28DRAFT_3969at 177.060 kb on + strand, within EX28DRAFT_3969at 177.104 kb on - strand, within EX28DRAFT_3969at 177.223 kb on - strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.225 kb on + strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.226 kb on - strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969at 177.234 kb on + strand, within EX28DRAFT_3969

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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174,922 + EX28DRAFT_3966 0.29 -0.7
174,922 + EX28DRAFT_3966 0.29 -0.3
174,922 + EX28DRAFT_3966 0.29 +1.2
174,923 - EX28DRAFT_3966 0.29 +0.4
174,923 - EX28DRAFT_3966 0.29 +0.1
174,923 - EX28DRAFT_3966 0.29 -0.3
174,989 - EX28DRAFT_3966 0.34 -2.7
175,014 + EX28DRAFT_3966 0.36 +2.2
175,119 + EX28DRAFT_3966 0.44 +0.0
175,119 + EX28DRAFT_3966 0.44 +0.1
175,119 + EX28DRAFT_3966 0.44 -1.0
175,119 + EX28DRAFT_3966 0.44 -1.4
175,119 + EX28DRAFT_3966 0.44 -0.0
175,120 - EX28DRAFT_3966 0.44 -0.3
175,120 - EX28DRAFT_3966 0.44 +2.2
175,370 - EX28DRAFT_3966 0.63 +0.2
175,376 - EX28DRAFT_3966 0.64 +0.3
175,502 - EX28DRAFT_3966 0.74 -0.3
175,633 + EX28DRAFT_3966 0.84 -0.7
175,658 - EX28DRAFT_3966 0.86 -0.8
175,658 - EX28DRAFT_3966 0.86 +0.6
175,820 - +0.6
175,820 - +0.9
175,838 - +0.2
175,838 - +0.1
175,841 + -0.4
175,842 - +0.8
175,873 + -1.3
175,891 + +0.1
175,891 + +0.4
175,891 + +0.1
176,003 - EX28DRAFT_3967 0.23 +0.5
176,078 + EX28DRAFT_3967 0.45 +0.9
176,270 - +1.2
176,339 + EX28DRAFT_3968 0.23 +0.3
176,341 + EX28DRAFT_3968 0.24 +1.0
176,648 + -1.2
176,648 + +0.9
176,649 - -0.1
176,718 + -0.1
176,719 - +0.0
176,959 + EX28DRAFT_3969 0.20 -0.7
177,060 + EX28DRAFT_3969 0.27 +0.5
177,060 + EX28DRAFT_3969 0.27 -1.4
177,104 - EX28DRAFT_3969 0.31 +0.6
177,223 - EX28DRAFT_3969 0.40 -0.5
177,225 + EX28DRAFT_3969 0.40 -0.0
177,225 + EX28DRAFT_3969 0.40 +0.6
177,225 + EX28DRAFT_3969 0.40 -0.9
177,225 + EX28DRAFT_3969 0.40 -0.2
177,226 - EX28DRAFT_3969 0.40 +0.1
177,226 - EX28DRAFT_3969 0.40 -2.7
177,226 - EX28DRAFT_3969 0.40 -0.0
177,234 + EX28DRAFT_3969 0.40 +0.4
177,234 + EX28DRAFT_3969 0.40 +0.7
177,234 + EX28DRAFT_3969 0.40 -0.7

Or see this region's nucleotide sequence