Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3932

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3930 and EX28DRAFT_3931 are separated by 148 nucleotidesEX28DRAFT_3931 and EX28DRAFT_3932 are separated by 186 nucleotidesEX28DRAFT_3932 and EX28DRAFT_3933 are separated by 148 nucleotides EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481 _3930 EX28DRAFT_3931: EX28DRAFT_3931 - Predicted acetyltransferase, at 139,630 to 140,049 _3931 EX28DRAFT_3932: EX28DRAFT_3932 - transcriptional regulator, TetR family, at 140,236 to 140,805 _3932 EX28DRAFT_3933: EX28DRAFT_3933 - RND family efflux transporter, MFP subunit, at 140,954 to 142,075 _3933 Position (kb) 140 141Strain fitness (log2 ratio) -2 -1 0 1 2at 139.328 kb on - strand, within EX28DRAFT_3930at 139.328 kb on - strand, within EX28DRAFT_3930at 139.397 kb on + strand, within EX28DRAFT_3930at 139.455 kb on + strandat 139.508 kb on + strandat 139.516 kb on - strandat 139.516 kb on - strandat 139.518 kb on - strandat 139.570 kb on - strandat 139.574 kb on + strandat 139.577 kb on - strandat 139.632 kb on - strandat 139.647 kb on + strandat 139.648 kb on - strandat 139.649 kb on + strandat 139.649 kb on + strandat 139.649 kb on + strandat 139.650 kb on - strandat 139.650 kb on - strandat 139.650 kb on - strandat 139.670 kb on + strandat 139.671 kb on - strandat 139.977 kb on + strand, within EX28DRAFT_3931at 139.978 kb on - strand, within EX28DRAFT_3931at 139.980 kb on - strand, within EX28DRAFT_3931at 139.980 kb on - strand, within EX28DRAFT_3931at 139.999 kb on + strand, within EX28DRAFT_3931at 140.024 kb on - strandat 140.028 kb on + strandat 140.028 kb on + strandat 140.029 kb on - strandat 140.029 kb on - strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.050 kb on - strandat 140.061 kb on + strandat 140.152 kb on + strandat 140.668 kb on - strand, within EX28DRAFT_3932at 140.735 kb on + strand, within EX28DRAFT_3932at 140.757 kb on - strandat 140.757 kb on - strandat 140.768 kb on - strandat 140.780 kb on + strandat 140.785 kb on - strandat 140.804 kb on - strandat 140.818 kb on - strandat 140.835 kb on - strandat 140.891 kb on - strandat 140.894 kb on + strandat 140.895 kb on - strandat 140.910 kb on + strandat 141.566 kb on + strand, within EX28DRAFT_3933at 141.567 kb on - strand, within EX28DRAFT_3933at 141.678 kb on - strand, within EX28DRAFT_3933at 141.678 kb on - strand, within EX28DRAFT_3933

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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139,328 - EX28DRAFT_3930 0.81 -0.3
139,328 - EX28DRAFT_3930 0.81 +0.9
139,397 + EX28DRAFT_3930 0.89 +0.0
139,455 + -2.7
139,508 + -0.6
139,516 - -0.9
139,516 - -0.2
139,518 - +1.0
139,570 - +0.5
139,574 + +0.6
139,577 - +0.2
139,632 - +0.9
139,647 + +0.7
139,648 - +1.2
139,649 + +0.3
139,649 + +0.3
139,649 + -0.2
139,650 - +1.8
139,650 - +0.0
139,650 - -0.0
139,670 + +0.0
139,671 - +0.1
139,977 + EX28DRAFT_3931 0.83 +0.0
139,978 - EX28DRAFT_3931 0.83 -0.4
139,980 - EX28DRAFT_3931 0.83 +0.1
139,980 - EX28DRAFT_3931 0.83 -0.3
139,999 + EX28DRAFT_3931 0.88 -1.2
140,024 - -0.5
140,028 + -0.2
140,028 + -1.3
140,029 - -0.9
140,029 - +0.1
140,050 - +0.1
140,050 - +0.2
140,050 - +0.7
140,061 + -2.0
140,152 + +0.2
140,668 - EX28DRAFT_3932 0.76 +0.4
140,735 + EX28DRAFT_3932 0.88 +0.4
140,757 - +0.7
140,757 - +0.2
140,768 - +0.4
140,780 + -1.0
140,785 - -0.5
140,804 - +0.0
140,818 - +0.2
140,835 - +0.1
140,891 - -0.5
140,894 + +0.7
140,895 - -0.3
140,910 + -0.3
141,566 + EX28DRAFT_3933 0.55 -0.3
141,567 - EX28DRAFT_3933 0.55 +0.3
141,678 - EX28DRAFT_3933 0.65 +0.3
141,678 - EX28DRAFT_3933 0.65 +0.0

Or see this region's nucleotide sequence