Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3877

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3876 and EX28DRAFT_3877 are separated by 24 nucleotidesEX28DRAFT_3877 and EX28DRAFT_3878 are separated by 96 nucleotides EX28DRAFT_3876: EX28DRAFT_3876 - Lipid A core - O-antigen ligase and related enzymes, at 85,968 to 87,182 _3876 EX28DRAFT_3877: EX28DRAFT_3877 - hypothetical protein, at 87,207 to 88,217 _3877 EX28DRAFT_3878: EX28DRAFT_3878 - lipopolysaccharide heptosyltransferase III, putative, at 88,314 to 89,384 _3878 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1 2 3at 86.317 kb on - strand, within EX28DRAFT_3876at 86.338 kb on + strand, within EX28DRAFT_3876at 86.365 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.376 kb on + strand, within EX28DRAFT_3876at 86.377 kb on - strand, within EX28DRAFT_3876at 86.412 kb on - strand, within EX28DRAFT_3876at 86.478 kb on - strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.479 kb on + strand, within EX28DRAFT_3876at 86.480 kb on - strand, within EX28DRAFT_3876at 86.507 kb on + strand, within EX28DRAFT_3876at 86.558 kb on - strand, within EX28DRAFT_3876at 86.669 kb on + strand, within EX28DRAFT_3876at 86.723 kb on - strand, within EX28DRAFT_3876at 86.752 kb on - strand, within EX28DRAFT_3876at 86.862 kb on - strand, within EX28DRAFT_3876at 86.924 kb on - strand, within EX28DRAFT_3876at 87.007 kb on + strand, within EX28DRAFT_3876at 87.098 kb on - strandat 87.100 kb on + strandat 87.180 kb on + strandat 87.209 kb on - strandat 87.226 kb on + strandat 87.285 kb on + strandat 87.330 kb on - strand, within EX28DRAFT_3877at 87.368 kb on + strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.369 kb on - strand, within EX28DRAFT_3877at 87.379 kb on + strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.380 kb on - strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.475 kb on + strand, within EX28DRAFT_3877at 87.476 kb on - strand, within EX28DRAFT_3877at 87.480 kb on - strand, within EX28DRAFT_3877at 87.533 kb on + strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.534 kb on - strand, within EX28DRAFT_3877at 87.536 kb on - strand, within EX28DRAFT_3877at 87.631 kb on + strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.866 kb on - strand, within EX28DRAFT_3877at 87.914 kb on + strand, within EX28DRAFT_3877at 88.010 kb on - strand, within EX28DRAFT_3877at 88.032 kb on - strand, within EX28DRAFT_3877at 88.091 kb on + strand, within EX28DRAFT_3877at 88.131 kb on - strandat 88.145 kb on + strandat 88.194 kb on + strandat 88.194 kb on + strandat 88.195 kb on - strandat 88.241 kb on - strandat 88.300 kb on - strandat 88.310 kb on + strandat 88.357 kb on + strandat 88.523 kb on + strand, within EX28DRAFT_3878at 88.523 kb on + strand, within EX28DRAFT_3878at 88.700 kb on + strand, within EX28DRAFT_3878at 88.701 kb on - strand, within EX28DRAFT_3878at 88.798 kb on + strand, within EX28DRAFT_3878at 88.834 kb on - strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.931 kb on + strand, within EX28DRAFT_3878at 88.991 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.168 kb on + strand, within EX28DRAFT_3878

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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86,317 - EX28DRAFT_3876 0.29 +0.6
86,338 + EX28DRAFT_3876 0.30 +1.2
86,365 + EX28DRAFT_3876 0.33 +0.6
86,376 + EX28DRAFT_3876 0.34 +2.9
86,376 + EX28DRAFT_3876 0.34 +0.8
86,377 - EX28DRAFT_3876 0.34 +0.5
86,412 - EX28DRAFT_3876 0.37 +0.8
86,478 - EX28DRAFT_3876 0.42 +0.7
86,479 + EX28DRAFT_3876 0.42 +0.9
86,479 + EX28DRAFT_3876 0.42 +0.4
86,480 - EX28DRAFT_3876 0.42 +0.8
86,507 + EX28DRAFT_3876 0.44 +1.2
86,558 - EX28DRAFT_3876 0.49 +1.0
86,669 + EX28DRAFT_3876 0.58 -0.4
86,723 - EX28DRAFT_3876 0.62 +0.7
86,752 - EX28DRAFT_3876 0.65 +1.2
86,862 - EX28DRAFT_3876 0.74 +0.3
86,924 - EX28DRAFT_3876 0.79 +0.0
87,007 + EX28DRAFT_3876 0.86 +0.6
87,098 - +0.7
87,100 + +1.4
87,180 + -1.2
87,209 - +0.8
87,226 + +1.1
87,285 + +0.8
87,330 - EX28DRAFT_3877 0.12 +0.4
87,368 + EX28DRAFT_3877 0.16 +1.0
87,369 - EX28DRAFT_3877 0.16 +0.6
87,369 - EX28DRAFT_3877 0.16 +0.8
87,379 + EX28DRAFT_3877 0.17 +0.3
87,380 - EX28DRAFT_3877 0.17 +0.3
87,380 - EX28DRAFT_3877 0.17 +0.8
87,380 - EX28DRAFT_3877 0.17 +0.5
87,380 - EX28DRAFT_3877 0.17 -0.4
87,475 + EX28DRAFT_3877 0.27 +0.9
87,475 + EX28DRAFT_3877 0.27 +0.8
87,476 - EX28DRAFT_3877 0.27 +1.3
87,480 - EX28DRAFT_3877 0.27 +0.7
87,533 + EX28DRAFT_3877 0.32 +0.7
87,534 - EX28DRAFT_3877 0.32 +0.5
87,534 - EX28DRAFT_3877 0.32 +0.2
87,534 - EX28DRAFT_3877 0.32 +0.8
87,534 - EX28DRAFT_3877 0.32 +1.1
87,536 - EX28DRAFT_3877 0.33 +0.7
87,631 + EX28DRAFT_3877 0.42 +0.6
87,866 - EX28DRAFT_3877 0.65 +1.1
87,866 - EX28DRAFT_3877 0.65 +0.8
87,866 - EX28DRAFT_3877 0.65 +2.5
87,866 - EX28DRAFT_3877 0.65 +1.3
87,914 + EX28DRAFT_3877 0.70 +0.4
88,010 - EX28DRAFT_3877 0.79 +1.0
88,032 - EX28DRAFT_3877 0.82 -1.0
88,091 + EX28DRAFT_3877 0.87 +1.6
88,131 - +0.8
88,145 + +0.2
88,194 + +0.8
88,194 + +0.9
88,195 - +0.1
88,241 - -0.6
88,300 - +0.4
88,310 + -0.3
88,357 + -0.2
88,523 + EX28DRAFT_3878 0.20 -1.2
88,523 + EX28DRAFT_3878 0.20 +0.3
88,700 + EX28DRAFT_3878 0.36 -1.3
88,701 - EX28DRAFT_3878 0.36 -0.1
88,798 + EX28DRAFT_3878 0.45 +0.6
88,834 - EX28DRAFT_3878 0.49 -1.0
88,896 + EX28DRAFT_3878 0.54 -1.0
88,896 + EX28DRAFT_3878 0.54 +0.2
88,897 - EX28DRAFT_3878 0.54 -0.4
88,897 - EX28DRAFT_3878 0.54 -0.8
88,931 + EX28DRAFT_3878 0.58 -0.3
88,991 + EX28DRAFT_3878 0.63 +0.2
89,095 + EX28DRAFT_3878 0.73 -1.7
89,095 + EX28DRAFT_3878 0.73 +1.4
89,168 + EX28DRAFT_3878 0.80 +2.2

Or see this region's nucleotide sequence