Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3840

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3838 and EX28DRAFT_3839 are separated by 93 nucleotidesEX28DRAFT_3839 and EX28DRAFT_3840 are separated by 289 nucleotidesEX28DRAFT_3840 and EX28DRAFT_3841 are separated by 395 nucleotides EX28DRAFT_3838: EX28DRAFT_3838 - Fe-S-cluster-containing hydrogenase components 2, at 45,731 to 46,186 _3838 EX28DRAFT_3839: EX28DRAFT_3839 - Helix-turn-helix domain, at 46,280 to 46,691 _3839 EX28DRAFT_3840: EX28DRAFT_3840 - Uncharacterized conserved protein, at 46,981 to 48,057 _3840 EX28DRAFT_3841: EX28DRAFT_3841 - Outer membrane protein V, at 48,453 to 49,193 _3841 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.047 kb on + strand, within EX28DRAFT_3838at 46.048 kb on - strand, within EX28DRAFT_3838at 46.207 kb on + strandat 46.207 kb on + strandat 46.207 kb on + strandat 46.231 kb on + strandat 46.231 kb on + strandat 46.232 kb on - strandat 46.270 kb on + strandat 46.270 kb on + strandat 46.270 kb on + strandat 46.270 kb on + strandat 46.291 kb on + strandat 46.292 kb on - strandat 46.294 kb on + strandat 46.294 kb on + strandat 46.295 kb on - strandat 46.295 kb on - strandat 46.295 kb on - strandat 46.308 kb on + strandat 46.334 kb on + strand, within EX28DRAFT_3839at 46.506 kb on + strand, within EX28DRAFT_3839at 46.507 kb on - strand, within EX28DRAFT_3839at 46.507 kb on - strand, within EX28DRAFT_3839at 46.519 kb on + strand, within EX28DRAFT_3839at 46.519 kb on + strand, within EX28DRAFT_3839at 46.520 kb on - strand, within EX28DRAFT_3839at 46.671 kb on + strandat 46.672 kb on - strandat 46.710 kb on - strandat 46.721 kb on + strandat 46.773 kb on + strandat 46.773 kb on + strandat 46.774 kb on - strandat 46.783 kb on + strandat 46.784 kb on - strandat 46.837 kb on + strandat 46.846 kb on - strandat 46.914 kb on + strandat 46.936 kb on + strandat 46.937 kb on - strandat 47.021 kb on + strandat 47.443 kb on - strand, within EX28DRAFT_3840at 47.590 kb on - strand, within EX28DRAFT_3840at 47.676 kb on + strand, within EX28DRAFT_3840at 47.685 kb on + strand, within EX28DRAFT_3840at 47.737 kb on - strand, within EX28DRAFT_3840at 47.755 kb on - strand, within EX28DRAFT_3840at 48.007 kb on - strandat 48.007 kb on - strandat 48.047 kb on + strandat 48.049 kb on + strandat 48.051 kb on + strandat 48.052 kb on - strandat 48.052 kb on - strandat 48.248 kb on + strandat 48.303 kb on - strandat 48.387 kb on - strandat 48.544 kb on + strand, within EX28DRAFT_3841at 48.565 kb on + strand, within EX28DRAFT_3841at 48.565 kb on + strand, within EX28DRAFT_3841at 48.607 kb on + strand, within EX28DRAFT_3841at 48.608 kb on - strand, within EX28DRAFT_3841at 48.608 kb on - strand, within EX28DRAFT_3841at 48.634 kb on + strand, within EX28DRAFT_3841at 48.679 kb on + strand, within EX28DRAFT_3841at 48.682 kb on + strand, within EX28DRAFT_3841at 48.683 kb on - strand, within EX28DRAFT_3841at 48.766 kb on + strand, within EX28DRAFT_3841at 48.767 kb on - strand, within EX28DRAFT_3841at 48.856 kb on + strand, within EX28DRAFT_3841at 48.857 kb on - strand, within EX28DRAFT_3841

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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46,047 + EX28DRAFT_3838 0.69 +0.5
46,048 - EX28DRAFT_3838 0.70 -0.1
46,207 + -0.1
46,207 + -1.1
46,207 + +0.3
46,231 + +0.2
46,231 + +0.4
46,232 - +1.7
46,270 + +0.3
46,270 + -0.3
46,270 + +0.3
46,270 + -0.3
46,291 + +0.0
46,292 - -0.6
46,294 + +1.3
46,294 + -0.6
46,295 - -0.5
46,295 - -0.4
46,295 - +0.8
46,308 + +0.1
46,334 + EX28DRAFT_3839 0.13 +0.3
46,506 + EX28DRAFT_3839 0.55 +0.5
46,507 - EX28DRAFT_3839 0.55 -0.9
46,507 - EX28DRAFT_3839 0.55 +0.2
46,519 + EX28DRAFT_3839 0.58 -0.5
46,519 + EX28DRAFT_3839 0.58 +0.7
46,520 - EX28DRAFT_3839 0.58 +0.4
46,671 + -0.4
46,672 - -0.2
46,710 - -1.0
46,721 + -0.3
46,773 + -1.1
46,773 + +0.2
46,774 - +0.1
46,783 + -0.3
46,784 - -0.2
46,837 + +0.1
46,846 - +0.9
46,914 + +0.8
46,936 + -0.6
46,937 - +0.4
47,021 + +0.6
47,443 - EX28DRAFT_3840 0.43 -2.0
47,590 - EX28DRAFT_3840 0.57 +0.8
47,676 + EX28DRAFT_3840 0.65 +0.6
47,685 + EX28DRAFT_3840 0.65 +1.0
47,737 - EX28DRAFT_3840 0.70 +0.2
47,755 - EX28DRAFT_3840 0.72 +0.5
48,007 - +0.5
48,007 - +0.7
48,047 + +0.2
48,049 + +0.4
48,051 + +0.4
48,052 - +0.1
48,052 - +0.7
48,248 + -0.2
48,303 - +1.2
48,387 - +0.2
48,544 + EX28DRAFT_3841 0.12 -0.1
48,565 + EX28DRAFT_3841 0.15 +0.2
48,565 + EX28DRAFT_3841 0.15 -0.6
48,607 + EX28DRAFT_3841 0.21 -0.0
48,608 - EX28DRAFT_3841 0.21 +0.7
48,608 - EX28DRAFT_3841 0.21 +0.5
48,634 + EX28DRAFT_3841 0.24 +0.9
48,679 + EX28DRAFT_3841 0.30 -0.1
48,682 + EX28DRAFT_3841 0.31 -0.2
48,683 - EX28DRAFT_3841 0.31 +0.4
48,766 + EX28DRAFT_3841 0.42 -0.3
48,767 - EX28DRAFT_3841 0.42 +1.6
48,856 + EX28DRAFT_3841 0.54 +0.2
48,857 - EX28DRAFT_3841 0.55 +1.8

Or see this region's nucleotide sequence