Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3042

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3040 and EX28DRAFT_3041 are separated by 81 nucleotidesEX28DRAFT_3041 and EX28DRAFT_3042 are separated by 103 nucleotidesEX28DRAFT_3042 and EX28DRAFT_3043 are separated by 1 nucleotidesEX28DRAFT_3043 and EX28DRAFT_3044 are separated by 42 nucleotidesEX28DRAFT_3044 and EX28DRAFT_3045 are separated by 4 nucleotides EX28DRAFT_3040: EX28DRAFT_3040 - TIGR00645 family protein, at 349,570 to 350,058 _3040 EX28DRAFT_3041: EX28DRAFT_3041 - hypothetical protein, at 350,140 to 350,643 _3041 EX28DRAFT_3042: EX28DRAFT_3042 - hypothetical protein, at 350,747 to 351,151 _3042 EX28DRAFT_3043: EX28DRAFT_3043 - hypothetical protein, at 351,153 to 351,602 _3043 EX28DRAFT_3044: EX28DRAFT_3044 - TonB system transport protein ExbD, group 1, at 351,645 to 352,070 _3044 EX28DRAFT_3045: EX28DRAFT_3045 - tonB-system energizer ExbB, at 352,075 to 352,806 _3045 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1at 349.776 kb on + strand, within EX28DRAFT_3040at 350.000 kb on + strand, within EX28DRAFT_3040at 350.030 kb on + strandat 350.030 kb on + strandat 350.031 kb on - strandat 350.031 kb on - strandat 350.059 kb on - strandat 350.092 kb on + strandat 350.092 kb on + strandat 350.093 kb on - strandat 350.094 kb on + strandat 350.095 kb on - strandat 350.095 kb on - strandat 350.095 kb on - strandat 350.132 kb on + strandat 350.132 kb on + strandat 350.174 kb on + strandat 350.174 kb on + strandat 350.406 kb on + strand, within EX28DRAFT_3041at 350.431 kb on - strand, within EX28DRAFT_3041at 350.609 kb on - strandat 350.774 kb on - strandat 350.912 kb on - strand, within EX28DRAFT_3042at 350.941 kb on - strand, within EX28DRAFT_3042at 351.215 kb on + strand, within EX28DRAFT_3043at 351.216 kb on - strand, within EX28DRAFT_3043at 351.273 kb on - strand, within EX28DRAFT_3043at 351.273 kb on - strand, within EX28DRAFT_3043at 351.275 kb on + strand, within EX28DRAFT_3043at 351.275 kb on + strand, within EX28DRAFT_3043at 351.276 kb on - strand, within EX28DRAFT_3043at 351.369 kb on + strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.395 kb on - strand, within EX28DRAFT_3043at 351.447 kb on + strand, within EX28DRAFT_3043at 351.447 kb on + strand, within EX28DRAFT_3043at 351.518 kb on + strand, within EX28DRAFT_3043at 351.718 kb on - strand, within EX28DRAFT_3044at 351.791 kb on + strand, within EX28DRAFT_3044at 351.792 kb on - strand, within EX28DRAFT_3044at 351.877 kb on + strand, within EX28DRAFT_3044at 351.878 kb on - strand, within EX28DRAFT_3044at 351.882 kb on - strand, within EX28DRAFT_3044at 351.882 kb on - strand, within EX28DRAFT_3044at 352.071 kb on - strandat 352.071 kb on - strandat 352.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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349,776 + EX28DRAFT_3040 0.42 -0.1
350,000 + EX28DRAFT_3040 0.88 +0.5
350,030 + +0.1
350,030 + +0.0
350,031 - -0.3
350,031 - -0.3
350,059 - -0.0
350,092 + +0.3
350,092 + +0.0
350,093 - -0.4
350,094 + -0.7
350,095 - -0.4
350,095 - +0.1
350,095 - +1.5
350,132 + +0.7
350,132 + -2.1
350,174 + -0.1
350,174 + +0.5
350,406 + EX28DRAFT_3041 0.53 +1.7
350,431 - EX28DRAFT_3041 0.58 +0.6
350,609 - +0.6
350,774 - +0.6
350,912 - EX28DRAFT_3042 0.41 +0.4
350,941 - EX28DRAFT_3042 0.48 +0.5
351,215 + EX28DRAFT_3043 0.14 -0.0
351,216 - EX28DRAFT_3043 0.14 +0.3
351,273 - EX28DRAFT_3043 0.27 +1.1
351,273 - EX28DRAFT_3043 0.27 +0.2
351,275 + EX28DRAFT_3043 0.27 +0.1
351,275 + EX28DRAFT_3043 0.27 -0.7
351,276 - EX28DRAFT_3043 0.27 -0.9
351,369 + EX28DRAFT_3043 0.48 -0.1
351,395 - EX28DRAFT_3043 0.54 +0.0
351,395 - EX28DRAFT_3043 0.54 -0.7
351,395 - EX28DRAFT_3043 0.54 +0.9
351,395 - EX28DRAFT_3043 0.54 +0.3
351,447 + EX28DRAFT_3043 0.65 +1.4
351,447 + EX28DRAFT_3043 0.65 -0.1
351,518 + EX28DRAFT_3043 0.81 -0.0
351,718 - EX28DRAFT_3044 0.17 +0.4
351,791 + EX28DRAFT_3044 0.34 -0.1
351,792 - EX28DRAFT_3044 0.35 -1.8
351,877 + EX28DRAFT_3044 0.54 -0.6
351,878 - EX28DRAFT_3044 0.55 -0.7
351,882 - EX28DRAFT_3044 0.56 -0.0
351,882 - EX28DRAFT_3044 0.56 +1.1
352,071 - -0.3
352,071 - -1.3
352,093 - -0.3

Or see this region's nucleotide sequence