Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2879 and EX28DRAFT_2880 are separated by 112 nucleotides EX28DRAFT_2880 and EX28DRAFT_2881 are separated by 110 nucleotides
EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279
_2879
EX28DRAFT_2880: EX28DRAFT_2880 - 5'-3' exonuclease (including N-terminal domain of PolI), at 187,392 to 188,147
_2880
EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358
_2881
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 186.515 kb on - strand, within EX28DRAFT_2879 at 186.646 kb on + strand, within EX28DRAFT_2879 at 186.888 kb on - strand, within EX28DRAFT_2879 at 186.889 kb on + strand, within EX28DRAFT_2879 at 186.889 kb on + strand, within EX28DRAFT_2879 at 186.890 kb on - strand, within EX28DRAFT_2879 at 186.890 kb on - strand, within EX28DRAFT_2879 at 187.036 kb on + strand, within EX28DRAFT_2879 at 187.074 kb on + strand, within EX28DRAFT_2879 at 187.075 kb on - strand, within EX28DRAFT_2879 at 187.075 kb on - strand, within EX28DRAFT_2879 at 187.080 kb on + strand, within EX28DRAFT_2879 at 187.097 kb on - strand, within EX28DRAFT_2879 at 187.135 kb on + strand, within EX28DRAFT_2879 at 187.334 kb on + strand at 187.335 kb on - strand at 187.376 kb on - strand at 187.387 kb on + strand at 187.405 kb on + strand at 187.405 kb on + strand at 187.818 kb on + strand, within EX28DRAFT_2880 at 187.819 kb on - strand, within EX28DRAFT_2880 at 187.819 kb on - strand, within EX28DRAFT_2880 at 188.001 kb on + strand, within EX28DRAFT_2880 at 188.002 kb on - strand, within EX28DRAFT_2880 at 188.092 kb on + strand at 188.092 kb on + strand at 188.104 kb on + strand at 188.104 kb on + strand at 188.123 kb on - strand at 188.137 kb on + strand at 188.305 kb on + strand at 188.305 kb on + strand at 188.306 kb on - strand at 188.306 kb on - strand at 188.310 kb on - strand at 188.310 kb on - strand at 188.358 kb on - strand at 188.358 kb on - strand at 188.394 kb on + strand, within EX28DRAFT_2881 at 188.555 kb on - strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.843 kb on - strand, within EX28DRAFT_2881 at 188.868 kb on + strand, within EX28DRAFT_2881 at 188.875 kb on - strand, within EX28DRAFT_2881 at 188.881 kb on + strand, within EX28DRAFT_2881 at 188.882 kb on - strand, within EX28DRAFT_2881 at 188.883 kb on + strand, within EX28DRAFT_2881 at 188.884 kb on - strand, within EX28DRAFT_2881 at 188.911 kb on + strand, within EX28DRAFT_2881 at 188.940 kb on + strand, within EX28DRAFT_2881 at 189.020 kb on - strand, within EX28DRAFT_2881
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 186,515 - EX28DRAFT_2879 0.44 -0.8 186,646 + EX28DRAFT_2879 0.54 -1.6 186,888 - EX28DRAFT_2879 0.71 -1.5 186,889 + EX28DRAFT_2879 0.71 -1.8 186,889 + EX28DRAFT_2879 0.71 +0.6 186,890 - EX28DRAFT_2879 0.71 +0.4 186,890 - EX28DRAFT_2879 0.71 -0.6 187,036 + EX28DRAFT_2879 0.82 -0.2 187,074 + EX28DRAFT_2879 0.85 +0.3 187,075 - EX28DRAFT_2879 0.85 +0.3 187,075 - EX28DRAFT_2879 0.85 +0.0 187,080 + EX28DRAFT_2879 0.85 +0.2 187,097 - EX28DRAFT_2879 0.87 +0.2 187,135 + EX28DRAFT_2879 0.89 +0.3 187,334 + +1.0 187,335 - +0.2 187,376 - -0.5 187,387 + +1.0 187,405 + -1.0 187,405 + +0.1 187,818 + EX28DRAFT_2880 0.56 -0.8 187,819 - EX28DRAFT_2880 0.56 +0.3 187,819 - EX28DRAFT_2880 0.56 +0.2 188,001 + EX28DRAFT_2880 0.81 -1.4 188,002 - EX28DRAFT_2880 0.81 +0.1 188,092 + +0.6 188,092 + -0.5 188,104 + +0.2 188,104 + +0.2 188,123 - +0.3 188,137 + +0.0 188,305 + -0.3 188,305 + +0.2 188,306 - -0.3 188,306 - -0.5 188,310 - +0.2 188,310 - +0.5 188,358 - -0.5 188,358 - +1.3 188,394 + EX28DRAFT_2881 0.12 +0.4 188,555 - EX28DRAFT_2881 0.27 -0.5 188,659 + EX28DRAFT_2881 0.36 -1.0 188,659 + EX28DRAFT_2881 0.36 -0.8 188,680 - EX28DRAFT_2881 0.38 +0.2 188,680 - EX28DRAFT_2881 0.38 +1.1 188,719 - EX28DRAFT_2881 0.42 -1.2 188,719 - EX28DRAFT_2881 0.42 -0.9 188,719 - EX28DRAFT_2881 0.42 -0.2 188,843 - EX28DRAFT_2881 0.53 -1.1 188,868 + EX28DRAFT_2881 0.55 -0.6 188,875 - EX28DRAFT_2881 0.56 +0.2 188,881 + EX28DRAFT_2881 0.57 +0.8 188,882 - EX28DRAFT_2881 0.57 -0.5 188,883 + EX28DRAFT_2881 0.57 -0.3 188,884 - EX28DRAFT_2881 0.57 -0.2 188,911 + EX28DRAFT_2881 0.59 -0.8 188,940 + EX28DRAFT_2881 0.62 +0.1 189,020 - EX28DRAFT_2881 0.69 -2.8
Or see this region's nucleotide sequence