Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2866

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2865 and EX28DRAFT_2866 are separated by 57 nucleotidesEX28DRAFT_2866 and EX28DRAFT_2867 are separated by 95 nucleotides EX28DRAFT_2865: EX28DRAFT_2865 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 169,118 to 170,416 _2865 EX28DRAFT_2866: EX28DRAFT_2866 - Uncharacterized domain of BarA-like signal transduction histidine kinases, at 170,474 to 173,233 _2866 EX28DRAFT_2867: EX28DRAFT_2867 - glycerate kinase, at 173,329 to 174,468 _2867 Position (kb) 170 171 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 169.704 kb on - strand, within EX28DRAFT_2865at 170.081 kb on - strand, within EX28DRAFT_2865at 170.121 kb on - strand, within EX28DRAFT_2865at 170.121 kb on - strand, within EX28DRAFT_2865at 170.295 kb on - strandat 170.309 kb on - strandat 170.366 kb on - strandat 170.403 kb on + strandat 170.404 kb on - strandat 170.436 kb on + strandat 170.436 kb on + strandat 170.436 kb on + strandat 170.437 kb on - strandat 170.442 kb on + strandat 170.442 kb on + strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.447 kb on - strandat 170.447 kb on - strandat 170.452 kb on - strandat 170.551 kb on + strandat 170.721 kb on + strandat 170.891 kb on + strand, within EX28DRAFT_2866at 170.891 kb on + strand, within EX28DRAFT_2866at 170.892 kb on - strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.939 kb on - strand, within EX28DRAFT_2866at 170.993 kb on + strand, within EX28DRAFT_2866at 170.994 kb on - strand, within EX28DRAFT_2866at 170.994 kb on - strand, within EX28DRAFT_2866at 171.158 kb on - strand, within EX28DRAFT_2866at 171.370 kb on + strand, within EX28DRAFT_2866at 171.562 kb on + strand, within EX28DRAFT_2866at 171.562 kb on + strand, within EX28DRAFT_2866at 171.649 kb on + strand, within EX28DRAFT_2866at 171.649 kb on + strand, within EX28DRAFT_2866at 171.649 kb on + strand, within EX28DRAFT_2866at 171.796 kb on + strand, within EX28DRAFT_2866at 171.796 kb on + strand, within EX28DRAFT_2866at 171.796 kb on + strand, within EX28DRAFT_2866at 171.796 kb on + strand, within EX28DRAFT_2866at 171.797 kb on - strand, within EX28DRAFT_2866at 171.896 kb on - strand, within EX28DRAFT_2866at 172.095 kb on - strand, within EX28DRAFT_2866at 172.140 kb on + strand, within EX28DRAFT_2866at 172.175 kb on - strand, within EX28DRAFT_2866at 172.203 kb on - strand, within EX28DRAFT_2866at 172.295 kb on + strand, within EX28DRAFT_2866at 172.296 kb on - strand, within EX28DRAFT_2866at 172.330 kb on + strand, within EX28DRAFT_2866at 172.419 kb on - strand, within EX28DRAFT_2866at 172.419 kb on - strand, within EX28DRAFT_2866at 172.498 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.629 kb on + strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.630 kb on - strand, within EX28DRAFT_2866at 172.772 kb on + strand, within EX28DRAFT_2866at 172.819 kb on - strand, within EX28DRAFT_2866at 172.851 kb on - strand, within EX28DRAFT_2866at 172.851 kb on - strand, within EX28DRAFT_2866at 172.999 kb on + strandat 173.220 kb on + strandat 173.236 kb on + strandat 173.237 kb on - strandat 173.237 kb on - strandat 173.269 kb on - strandat 173.330 kb on + strandat 173.331 kb on - strandat 173.331 kb on - strandat 173.331 kb on - strandat 173.432 kb on + strandat 173.641 kb on + strand, within EX28DRAFT_2867at 173.642 kb on - strand, within EX28DRAFT_2867at 173.784 kb on - strand, within EX28DRAFT_2867at 173.784 kb on - strand, within EX28DRAFT_2867at 173.849 kb on - strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.084 kb on + strand, within EX28DRAFT_2867at 174.085 kb on - strand, within EX28DRAFT_2867at 174.117 kb on + strand, within EX28DRAFT_2867at 174.118 kb on - strand, within EX28DRAFT_2867at 174.156 kb on + strand, within EX28DRAFT_2867

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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169,704 - EX28DRAFT_2865 0.45 -0.5
170,081 - EX28DRAFT_2865 0.74 +0.1
170,121 - EX28DRAFT_2865 0.77 +0.0
170,121 - EX28DRAFT_2865 0.77 -0.3
170,295 - +0.1
170,309 - +1.2
170,366 - -0.1
170,403 + +0.4
170,404 - +0.1
170,436 + +0.0
170,436 + -0.2
170,436 + -0.5
170,437 - +0.1
170,442 + +0.2
170,442 + +0.3
170,443 - +0.4
170,443 - +0.2
170,443 - +0.7
170,447 - -1.8
170,447 - -0.3
170,452 - +0.1
170,551 + -0.8
170,721 + +0.9
170,891 + EX28DRAFT_2866 0.15 +1.4
170,891 + EX28DRAFT_2866 0.15 +0.4
170,892 - EX28DRAFT_2866 0.15 +1.0
170,938 + EX28DRAFT_2866 0.17 -0.4
170,938 + EX28DRAFT_2866 0.17 +0.4
170,938 + EX28DRAFT_2866 0.17 -0.2
170,939 - EX28DRAFT_2866 0.17 +1.2
170,993 + EX28DRAFT_2866 0.19 +0.7
170,994 - EX28DRAFT_2866 0.19 -0.1
170,994 - EX28DRAFT_2866 0.19 +0.7
171,158 - EX28DRAFT_2866 0.25 +0.4
171,370 + EX28DRAFT_2866 0.32 +0.9
171,562 + EX28DRAFT_2866 0.39 -1.1
171,562 + EX28DRAFT_2866 0.39 +1.1
171,649 + EX28DRAFT_2866 0.43 +0.5
171,649 + EX28DRAFT_2866 0.43 +0.2
171,649 + EX28DRAFT_2866 0.43 +0.3
171,796 + EX28DRAFT_2866 0.48 +0.8
171,796 + EX28DRAFT_2866 0.48 +0.2
171,796 + EX28DRAFT_2866 0.48 +1.0
171,796 + EX28DRAFT_2866 0.48 +0.5
171,797 - EX28DRAFT_2866 0.48 -0.1
171,896 - EX28DRAFT_2866 0.52 +0.0
172,095 - EX28DRAFT_2866 0.59 -1.4
172,140 + EX28DRAFT_2866 0.60 +0.6
172,175 - EX28DRAFT_2866 0.62 +0.9
172,203 - EX28DRAFT_2866 0.63 +1.5
172,295 + EX28DRAFT_2866 0.66 +1.9
172,296 - EX28DRAFT_2866 0.66 -0.4
172,330 + EX28DRAFT_2866 0.67 +0.6
172,419 - EX28DRAFT_2866 0.70 -0.1
172,419 - EX28DRAFT_2866 0.70 +0.9
172,498 + EX28DRAFT_2866 0.73 +1.0
172,629 + EX28DRAFT_2866 0.78 +0.4
172,629 + EX28DRAFT_2866 0.78 +1.0
172,629 + EX28DRAFT_2866 0.78 +0.7
172,629 + EX28DRAFT_2866 0.78 +0.5
172,630 - EX28DRAFT_2866 0.78 +1.1
172,630 - EX28DRAFT_2866 0.78 -0.2
172,630 - EX28DRAFT_2866 0.78 +0.3
172,630 - EX28DRAFT_2866 0.78 +0.8
172,630 - EX28DRAFT_2866 0.78 +0.7
172,772 + EX28DRAFT_2866 0.83 +0.2
172,819 - EX28DRAFT_2866 0.85 +1.2
172,851 - EX28DRAFT_2866 0.86 +0.3
172,851 - EX28DRAFT_2866 0.86 +0.4
172,999 + +0.5
173,220 + -0.4
173,236 + -2.1
173,237 - -1.4
173,237 - +0.4
173,269 - -0.7
173,330 + -0.3
173,331 - +0.0
173,331 - +0.2
173,331 - +2.5
173,432 + -0.3
173,641 + EX28DRAFT_2867 0.27 -2.5
173,642 - EX28DRAFT_2867 0.27 -0.2
173,784 - EX28DRAFT_2867 0.40 +1.4
173,784 - EX28DRAFT_2867 0.40 -0.4
173,849 - EX28DRAFT_2867 0.46 -0.8
174,084 + EX28DRAFT_2867 0.66 -0.9
174,084 + EX28DRAFT_2867 0.66 -1.5
174,084 + EX28DRAFT_2867 0.66 +0.9
174,085 - EX28DRAFT_2867 0.66 -3.2
174,117 + EX28DRAFT_2867 0.69 -2.0
174,118 - EX28DRAFT_2867 0.69 -0.3
174,156 + EX28DRAFT_2867 0.73 -0.1

Or see this region's nucleotide sequence