Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2813

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2812 and EX28DRAFT_2813 are separated by 15 nucleotidesEX28DRAFT_2813 and EX28DRAFT_2814 are separated by 1 nucleotides EX28DRAFT_2812: EX28DRAFT_2812 - Ni,Fe-hydrogenase III large subunit, at 114,997 to 116,706 _2812 EX28DRAFT_2813: EX28DRAFT_2813 - Formate hydrogenlyase subunit 4, at 116,722 to 117,645 _2813 EX28DRAFT_2814: EX28DRAFT_2814 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 117,647 to 119,461 _2814 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.733 kb on + strand, within EX28DRAFT_2812at 115.804 kb on - strand, within EX28DRAFT_2812at 115.953 kb on - strand, within EX28DRAFT_2812at 116.063 kb on + strand, within EX28DRAFT_2812at 116.204 kb on + strand, within EX28DRAFT_2812at 116.244 kb on - strand, within EX28DRAFT_2812at 116.270 kb on + strand, within EX28DRAFT_2812at 116.342 kb on + strand, within EX28DRAFT_2812at 116.343 kb on - strand, within EX28DRAFT_2812at 116.343 kb on - strand, within EX28DRAFT_2812at 116.343 kb on - strand, within EX28DRAFT_2812at 116.476 kb on + strand, within EX28DRAFT_2812at 116.476 kb on + strand, within EX28DRAFT_2812at 116.476 kb on + strand, within EX28DRAFT_2812at 116.477 kb on - strand, within EX28DRAFT_2812at 116.477 kb on - strand, within EX28DRAFT_2812at 116.477 kb on - strand, within EX28DRAFT_2812at 116.477 kb on - strand, within EX28DRAFT_2812at 116.480 kb on + strand, within EX28DRAFT_2812at 116.480 kb on + strand, within EX28DRAFT_2812at 116.480 kb on + strand, within EX28DRAFT_2812at 116.481 kb on - strand, within EX28DRAFT_2812at 116.481 kb on - strand, within EX28DRAFT_2812at 116.484 kb on - strand, within EX28DRAFT_2812at 116.492 kb on + strand, within EX28DRAFT_2812at 116.492 kb on + strand, within EX28DRAFT_2812at 116.492 kb on + strand, within EX28DRAFT_2812at 116.493 kb on - strand, within EX28DRAFT_2812at 116.556 kb on - strandat 116.556 kb on - strandat 116.559 kb on - strandat 116.559 kb on - strandat 116.585 kb on + strandat 116.586 kb on - strandat 116.609 kb on - strandat 116.678 kb on + strandat 116.706 kb on + strandat 116.706 kb on + strandat 116.707 kb on - strandat 116.707 kb on - strandat 116.710 kb on + strandat 116.710 kb on + strandat 116.710 kb on + strandat 116.711 kb on - strandat 116.711 kb on - strandat 116.711 kb on - strandat 116.720 kb on - strandat 116.749 kb on + strandat 117.341 kb on + strand, within EX28DRAFT_2813at 117.342 kb on - strand, within EX28DRAFT_2813at 117.345 kb on + strand, within EX28DRAFT_2813at 117.345 kb on + strand, within EX28DRAFT_2813at 117.346 kb on - strand, within EX28DRAFT_2813at 117.988 kb on + strand, within EX28DRAFT_2814at 118.291 kb on - strand, within EX28DRAFT_2814at 118.291 kb on - strand, within EX28DRAFT_2814at 118.469 kb on - strand, within EX28DRAFT_2814

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
115,733 + EX28DRAFT_2812 0.43 -0.4
115,804 - EX28DRAFT_2812 0.47 -0.3
115,953 - EX28DRAFT_2812 0.56 -0.3
116,063 + EX28DRAFT_2812 0.62 +0.2
116,204 + EX28DRAFT_2812 0.71 +1.6
116,244 - EX28DRAFT_2812 0.73 -0.1
116,270 + EX28DRAFT_2812 0.74 +2.2
116,342 + EX28DRAFT_2812 0.79 +1.0
116,343 - EX28DRAFT_2812 0.79 -0.2
116,343 - EX28DRAFT_2812 0.79 +0.0
116,343 - EX28DRAFT_2812 0.79 -0.9
116,476 + EX28DRAFT_2812 0.86 +0.1
116,476 + EX28DRAFT_2812 0.86 -0.3
116,476 + EX28DRAFT_2812 0.86 +1.5
116,477 - EX28DRAFT_2812 0.87 +0.3
116,477 - EX28DRAFT_2812 0.87 +0.2
116,477 - EX28DRAFT_2812 0.87 -0.4
116,477 - EX28DRAFT_2812 0.87 +1.1
116,480 + EX28DRAFT_2812 0.87 -0.5
116,480 + EX28DRAFT_2812 0.87 +0.1
116,480 + EX28DRAFT_2812 0.87 -0.0
116,481 - EX28DRAFT_2812 0.87 -0.6
116,481 - EX28DRAFT_2812 0.87 +0.9
116,484 - EX28DRAFT_2812 0.87 +0.3
116,492 + EX28DRAFT_2812 0.87 +0.0
116,492 + EX28DRAFT_2812 0.87 +0.1
116,492 + EX28DRAFT_2812 0.87 +0.5
116,493 - EX28DRAFT_2812 0.87 +0.0
116,556 - +0.6
116,556 - -0.9
116,559 - -0.3
116,559 - +1.8
116,585 + +0.2
116,586 - -0.4
116,609 - +0.6
116,678 + -0.2
116,706 + -0.6
116,706 + -0.3
116,707 - -1.5
116,707 - -0.3
116,710 + +0.8
116,710 + -0.7
116,710 + +0.5
116,711 - -0.2
116,711 - -1.0
116,711 - -0.6
116,720 - -0.4
116,749 + -1.0
117,341 + EX28DRAFT_2813 0.67 +0.2
117,342 - EX28DRAFT_2813 0.67 -1.5
117,345 + EX28DRAFT_2813 0.67 -0.2
117,345 + EX28DRAFT_2813 0.67 -1.8
117,346 - EX28DRAFT_2813 0.68 -0.8
117,988 + EX28DRAFT_2814 0.19 +0.2
118,291 - EX28DRAFT_2814 0.35 -0.6
118,291 - EX28DRAFT_2814 0.35 +0.7
118,469 - EX28DRAFT_2814 0.45 +0.8

Or see this region's nucleotide sequence