Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2772

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2770 and EX28DRAFT_2771 overlap by 14 nucleotidesEX28DRAFT_2771 and EX28DRAFT_2772 are separated by 54 nucleotidesEX28DRAFT_2772 and EX28DRAFT_2773 are separated by 72 nucleotidesEX28DRAFT_2773 and EX28DRAFT_2774 are separated by 8 nucleotides EX28DRAFT_2770: EX28DRAFT_2770 - 2-isopropylmalate synthase, yeast type, at 78,763 to 80,418 _2770 EX28DRAFT_2771: EX28DRAFT_2771 - AraC-type DNA-binding domain-containing proteins, at 80,405 to 81,169 _2771 EX28DRAFT_2772: EX28DRAFT_2772 - S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS, at 81,224 to 81,739 _2772 EX28DRAFT_2773: EX28DRAFT_2773 - RNA, at 81,812 to 81,887 _2773 EX28DRAFT_2774: EX28DRAFT_2774 - glutamate-cysteine ligase (EC 6.3.2.2), at 81,896 to 83,440 _2774 Position (kb) 81 82Strain fitness (log2 ratio) -2 -1 0 1 2at 80.261 kb on - strandat 80.261 kb on - strandat 80.271 kb on + strandat 80.271 kb on + strandat 80.272 kb on - strandat 80.272 kb on - strandat 80.272 kb on - strandat 80.309 kb on - strandat 80.417 kb on - strandat 80.583 kb on - strand, within EX28DRAFT_2771at 80.782 kb on - strand, within EX28DRAFT_2771at 80.782 kb on - strand, within EX28DRAFT_2771at 80.782 kb on - strand, within EX28DRAFT_2771at 81.225 kb on + strandat 81.225 kb on + strandat 81.226 kb on - strandat 81.226 kb on - strandat 81.226 kb on - strandat 81.348 kb on + strand, within EX28DRAFT_2772at 81.348 kb on + strand, within EX28DRAFT_2772at 81.349 kb on - strand, within EX28DRAFT_2772at 81.352 kb on + strand, within EX28DRAFT_2772at 81.363 kb on + strand, within EX28DRAFT_2772at 81.477 kb on + strand, within EX28DRAFT_2772at 81.477 kb on + strand, within EX28DRAFT_2772at 81.577 kb on + strand, within EX28DRAFT_2772at 81.578 kb on - strand, within EX28DRAFT_2772at 81.683 kb on + strand, within EX28DRAFT_2772at 81.725 kb on - strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.732 kb on - strandat 81.739 kb on + strandat 81.740 kb on - strandat 81.774 kb on + strandat 81.789 kb on + strandat 81.790 kb on - strandat 81.808 kb on + strandat 81.809 kb on - strandat 81.857 kb on - strand, within EX28DRAFT_2773at 81.857 kb on - strand, within EX28DRAFT_2773at 81.859 kb on - strand, within EX28DRAFT_2773at 81.898 kb on - strandat 82.090 kb on + strand, within EX28DRAFT_2774at 82.298 kb on - strand, within EX28DRAFT_2774at 82.467 kb on - strand, within EX28DRAFT_2774at 82.476 kb on + strand, within EX28DRAFT_2774at 82.677 kb on + strand, within EX28DRAFT_2774at 82.700 kb on - strand, within EX28DRAFT_2774at 82.724 kb on - strand, within EX28DRAFT_2774

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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80,261 - -1.0
80,261 - -0.1
80,271 + +0.9
80,271 + +0.6
80,272 - -1.8
80,272 - +0.5
80,272 - -0.1
80,309 - -0.4
80,417 - +0.2
80,583 - EX28DRAFT_2771 0.23 +0.5
80,782 - EX28DRAFT_2771 0.49 -0.2
80,782 - EX28DRAFT_2771 0.49 -0.4
80,782 - EX28DRAFT_2771 0.49 +0.3
81,225 + -1.9
81,225 + -0.0
81,226 - -0.3
81,226 - -0.6
81,226 - -0.3
81,348 + EX28DRAFT_2772 0.24 -1.4
81,348 + EX28DRAFT_2772 0.24 -0.2
81,349 - EX28DRAFT_2772 0.24 +0.8
81,352 + EX28DRAFT_2772 0.25 -1.1
81,363 + EX28DRAFT_2772 0.27 -0.2
81,477 + EX28DRAFT_2772 0.49 -0.3
81,477 + EX28DRAFT_2772 0.49 +1.2
81,577 + EX28DRAFT_2772 0.68 -0.2
81,578 - EX28DRAFT_2772 0.69 -0.4
81,683 + EX28DRAFT_2772 0.89 -2.6
81,725 - +0.4
81,728 + -0.1
81,728 + -0.1
81,728 + +0.3
81,728 + -0.2
81,728 + -0.3
81,732 - -1.0
81,739 + +0.1
81,740 - -0.5
81,774 + +2.2
81,789 + -0.4
81,790 - +0.9
81,808 + -1.1
81,809 - -0.8
81,857 - EX28DRAFT_2773 0.59 +1.7
81,857 - EX28DRAFT_2773 0.59 +0.2
81,859 - EX28DRAFT_2773 0.62 +1.1
81,898 - -0.2
82,090 + EX28DRAFT_2774 0.13 -0.3
82,298 - EX28DRAFT_2774 0.26 +1.2
82,467 - EX28DRAFT_2774 0.37 -0.1
82,476 + EX28DRAFT_2774 0.38 -0.8
82,677 + EX28DRAFT_2774 0.51 -1.8
82,700 - EX28DRAFT_2774 0.52 +0.7
82,724 - EX28DRAFT_2774 0.54 +0.3

Or see this region's nucleotide sequence