Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2610 and EX28DRAFT_2611 are separated by 12 nucleotides EX28DRAFT_2611 and EX28DRAFT_2612 are separated by 123 nucleotides EX28DRAFT_2612 and EX28DRAFT_2613 are separated by 179 nucleotides
EX28DRAFT_2610: EX28DRAFT_2610 - diguanylate cyclase (GGDEF) domain, at 2,647,346 to 2,649,130
_2610
EX28DRAFT_2611: EX28DRAFT_2611 - AraC-type DNA-binding domain-containing proteins, at 2,649,143 to 2,649,547
_2611
EX28DRAFT_2612: EX28DRAFT_2612 - transcriptional regulator, TetR family, at 2,649,671 to 2,650,315
_2612
EX28DRAFT_2613: EX28DRAFT_2613 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,650,495 to 2,651,991
_2613
Position (kb)
2649
2650 Strain fitness (log2 ratio)
-1
0
1 at 2648.210 kb on - strand, within EX28DRAFT_2610 at 2648.249 kb on - strand, within EX28DRAFT_2610 at 2648.429 kb on + strand, within EX28DRAFT_2610 at 2648.519 kb on - strand, within EX28DRAFT_2610 at 2648.674 kb on + strand, within EX28DRAFT_2610 at 2648.934 kb on - strand, within EX28DRAFT_2610 at 2648.938 kb on + strand, within EX28DRAFT_2610 at 2648.938 kb on + strand, within EX28DRAFT_2610 at 2649.156 kb on - strand at 2649.189 kb on + strand, within EX28DRAFT_2611 at 2649.190 kb on - strand, within EX28DRAFT_2611 at 2649.296 kb on + strand, within EX28DRAFT_2611 at 2649.297 kb on - strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.320 kb on - strand, within EX28DRAFT_2611 at 2649.331 kb on + strand, within EX28DRAFT_2611 at 2649.366 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.375 kb on - strand, within EX28DRAFT_2611 at 2649.377 kb on - strand, within EX28DRAFT_2611 at 2649.381 kb on - strand, within EX28DRAFT_2611 at 2649.414 kb on + strand, within EX28DRAFT_2611 at 2649.547 kb on + strand at 2650.316 kb on - strand at 2650.389 kb on + strand at 2650.390 kb on - strand at 2650.390 kb on - strand at 2650.393 kb on - strand at 2650.393 kb on - strand at 2650.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,648,210 - EX28DRAFT_2610 0.48 +0.1 2,648,249 - EX28DRAFT_2610 0.51 -0.4 2,648,429 + EX28DRAFT_2610 0.61 -0.2 2,648,519 - EX28DRAFT_2610 0.66 -0.1 2,648,674 + EX28DRAFT_2610 0.74 +1.3 2,648,934 - EX28DRAFT_2610 0.89 -1.7 2,648,938 + EX28DRAFT_2610 0.89 -1.0 2,648,938 + EX28DRAFT_2610 0.89 -0.3 2,649,156 - -0.1 2,649,189 + EX28DRAFT_2611 0.11 +0.1 2,649,190 - EX28DRAFT_2611 0.12 +0.1 2,649,296 + EX28DRAFT_2611 0.38 -0.8 2,649,297 - EX28DRAFT_2611 0.38 -0.0 2,649,319 + EX28DRAFT_2611 0.43 -0.2 2,649,319 + EX28DRAFT_2611 0.43 -0.3 2,649,319 + EX28DRAFT_2611 0.43 +0.9 2,649,320 - EX28DRAFT_2611 0.44 +0.5 2,649,331 + EX28DRAFT_2611 0.46 +0.9 2,649,366 + EX28DRAFT_2611 0.55 +0.3 2,649,374 + EX28DRAFT_2611 0.57 +0.2 2,649,374 + EX28DRAFT_2611 0.57 +0.7 2,649,374 + EX28DRAFT_2611 0.57 +0.8 2,649,374 + EX28DRAFT_2611 0.57 -0.4 2,649,375 - EX28DRAFT_2611 0.57 +1.1 2,649,377 - EX28DRAFT_2611 0.58 -0.3 2,649,381 - EX28DRAFT_2611 0.59 -1.4 2,649,414 + EX28DRAFT_2611 0.67 -0.6 2,649,547 + +0.2 2,650,316 - -0.5 2,650,389 + +1.0 2,650,390 - +0.9 2,650,390 - +0.4 2,650,393 - +0.1 2,650,393 - +0.3 2,650,495 - +1.4
Or see this region's nucleotide sequence