Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2611

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2610 and EX28DRAFT_2611 are separated by 12 nucleotidesEX28DRAFT_2611 and EX28DRAFT_2612 are separated by 123 nucleotidesEX28DRAFT_2612 and EX28DRAFT_2613 are separated by 179 nucleotides EX28DRAFT_2610: EX28DRAFT_2610 - diguanylate cyclase (GGDEF) domain, at 2,647,346 to 2,649,130 _2610 EX28DRAFT_2611: EX28DRAFT_2611 - AraC-type DNA-binding domain-containing proteins, at 2,649,143 to 2,649,547 _2611 EX28DRAFT_2612: EX28DRAFT_2612 - transcriptional regulator, TetR family, at 2,649,671 to 2,650,315 _2612 EX28DRAFT_2613: EX28DRAFT_2613 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,650,495 to 2,651,991 _2613 Position (kb) 2649 2650Strain fitness (log2 ratio) -1 0 1at 2648.210 kb on - strand, within EX28DRAFT_2610at 2648.249 kb on - strand, within EX28DRAFT_2610at 2648.429 kb on + strand, within EX28DRAFT_2610at 2648.519 kb on - strand, within EX28DRAFT_2610at 2648.674 kb on + strand, within EX28DRAFT_2610at 2648.934 kb on - strand, within EX28DRAFT_2610at 2648.938 kb on + strand, within EX28DRAFT_2610at 2648.938 kb on + strand, within EX28DRAFT_2610at 2649.156 kb on - strandat 2649.189 kb on + strand, within EX28DRAFT_2611at 2649.190 kb on - strand, within EX28DRAFT_2611at 2649.296 kb on + strand, within EX28DRAFT_2611at 2649.297 kb on - strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.320 kb on - strand, within EX28DRAFT_2611at 2649.331 kb on + strand, within EX28DRAFT_2611at 2649.366 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.375 kb on - strand, within EX28DRAFT_2611at 2649.377 kb on - strand, within EX28DRAFT_2611at 2649.381 kb on - strand, within EX28DRAFT_2611at 2649.414 kb on + strand, within EX28DRAFT_2611at 2649.547 kb on + strandat 2650.316 kb on - strandat 2650.389 kb on + strandat 2650.390 kb on - strandat 2650.390 kb on - strandat 2650.393 kb on - strandat 2650.393 kb on - strandat 2650.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
2,648,210 - EX28DRAFT_2610 0.48 +0.1
2,648,249 - EX28DRAFT_2610 0.51 -0.4
2,648,429 + EX28DRAFT_2610 0.61 -0.2
2,648,519 - EX28DRAFT_2610 0.66 -0.1
2,648,674 + EX28DRAFT_2610 0.74 +1.3
2,648,934 - EX28DRAFT_2610 0.89 -1.7
2,648,938 + EX28DRAFT_2610 0.89 -1.0
2,648,938 + EX28DRAFT_2610 0.89 -0.3
2,649,156 - -0.1
2,649,189 + EX28DRAFT_2611 0.11 +0.1
2,649,190 - EX28DRAFT_2611 0.12 +0.1
2,649,296 + EX28DRAFT_2611 0.38 -0.8
2,649,297 - EX28DRAFT_2611 0.38 -0.0
2,649,319 + EX28DRAFT_2611 0.43 -0.2
2,649,319 + EX28DRAFT_2611 0.43 -0.3
2,649,319 + EX28DRAFT_2611 0.43 +0.9
2,649,320 - EX28DRAFT_2611 0.44 +0.5
2,649,331 + EX28DRAFT_2611 0.46 +0.9
2,649,366 + EX28DRAFT_2611 0.55 +0.3
2,649,374 + EX28DRAFT_2611 0.57 +0.2
2,649,374 + EX28DRAFT_2611 0.57 +0.7
2,649,374 + EX28DRAFT_2611 0.57 +0.8
2,649,374 + EX28DRAFT_2611 0.57 -0.4
2,649,375 - EX28DRAFT_2611 0.57 +1.1
2,649,377 - EX28DRAFT_2611 0.58 -0.3
2,649,381 - EX28DRAFT_2611 0.59 -1.4
2,649,414 + EX28DRAFT_2611 0.67 -0.6
2,649,547 + +0.2
2,650,316 - -0.5
2,650,389 + +1.0
2,650,390 - +0.9
2,650,390 - +0.4
2,650,393 - +0.1
2,650,393 - +0.3
2,650,495 - +1.4

Or see this region's nucleotide sequence