Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotides EX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides
EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329
_2385
EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045
_2386
EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531
_2387
Position (kb)
2411
2412
2413 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2410.834 kb on - strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.837 kb on + strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.838 kb on - strand, within EX28DRAFT_2385 at 2410.968 kb on + strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2410.969 kb on - strand, within EX28DRAFT_2385 at 2411.136 kb on + strand at 2411.137 kb on - strand at 2411.157 kb on + strand at 2411.158 kb on - strand at 2411.161 kb on - strand at 2411.272 kb on + strand at 2411.395 kb on - strand at 2411.421 kb on + strand at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.522 kb on + strand, within EX28DRAFT_2386 at 2411.602 kb on + strand, within EX28DRAFT_2386 at 2411.603 kb on - strand, within EX28DRAFT_2386 at 2412.006 kb on + strand at 2412.032 kb on + strand at 2412.059 kb on - strand at 2412.086 kb on + strand at 2412.086 kb on + strand at 2412.087 kb on - strand at 2412.087 kb on - strand at 2412.088 kb on + strand at 2412.088 kb on + strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.089 kb on - strand at 2412.103 kb on + strand at 2412.103 kb on + strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.104 kb on - strand at 2412.402 kb on - strand, within EX28DRAFT_2387 at 2412.632 kb on + strand, within EX28DRAFT_2387 at 2412.660 kb on + strand, within EX28DRAFT_2387
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,410,834 - EX28DRAFT_2385 0.76 -0.3 2,410,837 + EX28DRAFT_2385 0.76 -1.8 2,410,837 + EX28DRAFT_2385 0.76 -1.2 2,410,837 + EX28DRAFT_2385 0.76 +0.2 2,410,838 - EX28DRAFT_2385 0.76 -2.7 2,410,838 - EX28DRAFT_2385 0.76 +0.6 2,410,968 + EX28DRAFT_2385 0.82 +0.5 2,410,969 - EX28DRAFT_2385 0.82 +0.6 2,410,969 - EX28DRAFT_2385 0.82 +0.2 2,411,136 + -0.3 2,411,137 - -0.3 2,411,157 + +0.2 2,411,158 - -2.9 2,411,161 - -0.0 2,411,272 + -0.4 2,411,395 - -0.4 2,411,421 + +1.0 2,411,522 + EX28DRAFT_2386 0.11 -0.2 2,411,522 + EX28DRAFT_2386 0.11 -1.1 2,411,522 + EX28DRAFT_2386 0.11 +0.1 2,411,602 + EX28DRAFT_2386 0.24 -1.2 2,411,603 - EX28DRAFT_2386 0.25 -0.1 2,412,006 + -0.9 2,412,032 + +0.0 2,412,059 - +0.1 2,412,086 + +0.6 2,412,086 + -0.3 2,412,087 - -0.4 2,412,087 - -0.7 2,412,088 + -0.5 2,412,088 + +0.2 2,412,089 - -0.4 2,412,089 - -0.3 2,412,089 - +0.2 2,412,089 - +0.1 2,412,103 + -0.5 2,412,103 + +0.8 2,412,104 - -0.7 2,412,104 - -0.3 2,412,104 - +0.3 2,412,104 - +0.7 2,412,104 - -0.3 2,412,402 - EX28DRAFT_2387 0.23 +0.6 2,412,632 + EX28DRAFT_2387 0.39 -0.0 2,412,660 + EX28DRAFT_2387 0.41 -0.1
Or see this region's nucleotide sequence