Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2284

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2283 and EX28DRAFT_2284 overlap by 4 nucleotidesEX28DRAFT_2284 and EX28DRAFT_2285 are separated by 638 nucleotides EX28DRAFT_2283: EX28DRAFT_2283 - Osmosensitive K+ channel histidine kinase, at 2,307,651 to 2,310,338 _2283 EX28DRAFT_2284: EX28DRAFT_2284 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,310,335 to 2,311,012 _2284 EX28DRAFT_2285: EX28DRAFT_2285 - ornithine decarboxylase SpeF, at 2,311,651 to 2,313,849 _2285 Position (kb) 2310 2311 2312Strain fitness (log2 ratio) -3 -2 -1 0 1at 2309.790 kb on - strand, within EX28DRAFT_2283at 2309.819 kb on + strand, within EX28DRAFT_2283at 2309.931 kb on - strand, within EX28DRAFT_2283at 2309.962 kb on + strand, within EX28DRAFT_2283at 2310.028 kb on - strand, within EX28DRAFT_2283at 2310.028 kb on - strand, within EX28DRAFT_2283at 2310.137 kb on + strandat 2310.322 kb on + strandat 2310.322 kb on + strandat 2310.373 kb on + strandat 2310.448 kb on - strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.450 kb on + strand, within EX28DRAFT_2284at 2310.451 kb on - strand, within EX28DRAFT_2284at 2310.864 kb on + strand, within EX28DRAFT_2284at 2310.865 kb on - strand, within EX28DRAFT_2284at 2310.915 kb on + strand, within EX28DRAFT_2284at 2310.916 kb on - strand, within EX28DRAFT_2284at 2310.916 kb on - strand, within EX28DRAFT_2284at 2310.918 kb on - strand, within EX28DRAFT_2284at 2310.918 kb on - strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.919 kb on + strand, within EX28DRAFT_2284at 2310.972 kb on + strandat 2311.119 kb on - strandat 2311.321 kb on + strandat 2311.322 kb on - strandat 2311.445 kb on - strandat 2311.698 kb on + strandat 2311.802 kb on + strandat 2311.870 kb on + strandat 2311.871 kb on - strand, within EX28DRAFT_2285at 2311.900 kb on + strand, within EX28DRAFT_2285at 2312.002 kb on + strand, within EX28DRAFT_2285at 2312.002 kb on + strand, within EX28DRAFT_2285

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,309,790 - EX28DRAFT_2283 0.80 -0.3
2,309,819 + EX28DRAFT_2283 0.81 +0.1
2,309,931 - EX28DRAFT_2283 0.85 +0.1
2,309,962 + EX28DRAFT_2283 0.86 +0.0
2,310,028 - EX28DRAFT_2283 0.88 -3.2
2,310,028 - EX28DRAFT_2283 0.88 -0.1
2,310,137 + +0.6
2,310,322 + +0.8
2,310,322 + -1.0
2,310,373 + -0.2
2,310,448 - EX28DRAFT_2284 0.17 +0.3
2,310,450 + EX28DRAFT_2284 0.17 +1.0
2,310,450 + EX28DRAFT_2284 0.17 +0.9
2,310,450 + EX28DRAFT_2284 0.17 +0.8
2,310,451 - EX28DRAFT_2284 0.17 -0.0
2,310,864 + EX28DRAFT_2284 0.78 +0.1
2,310,865 - EX28DRAFT_2284 0.78 +0.4
2,310,915 + EX28DRAFT_2284 0.86 +0.1
2,310,916 - EX28DRAFT_2284 0.86 +0.4
2,310,916 - EX28DRAFT_2284 0.86 +0.5
2,310,918 - EX28DRAFT_2284 0.86 +0.4
2,310,918 - EX28DRAFT_2284 0.86 +0.3
2,310,919 + EX28DRAFT_2284 0.86 -0.2
2,310,919 + EX28DRAFT_2284 0.86 -0.3
2,310,919 + EX28DRAFT_2284 0.86 +1.1
2,310,919 + EX28DRAFT_2284 0.86 +0.3
2,310,972 + +0.1
2,311,119 - +0.3
2,311,321 + -0.6
2,311,322 - -0.9
2,311,445 - +0.4
2,311,698 + +0.5
2,311,802 + +0.6
2,311,870 + -0.1
2,311,871 - EX28DRAFT_2285 0.10 +0.2
2,311,900 + EX28DRAFT_2285 0.11 -0.2
2,312,002 + EX28DRAFT_2285 0.16 +0.2
2,312,002 + EX28DRAFT_2285 0.16 -0.4

Or see this region's nucleotide sequence