Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2159 and EX28DRAFT_2160 are separated by 53 nucleotides EX28DRAFT_2160 and EX28DRAFT_2161 are separated by 67 nucleotides EX28DRAFT_2161 and EX28DRAFT_2162 are separated by 300 nucleotides EX28DRAFT_2162 and EX28DRAFT_2163 are separated by 119 nucleotides
EX28DRAFT_2159: EX28DRAFT_2159 - P pilus assembly protein, porin PapC, at 2,181,837 to 2,184,353
_2159
EX28DRAFT_2160: EX28DRAFT_2160 - P pilus assembly protein, pilin FimA, at 2,184,407 to 2,184,967
_2160
EX28DRAFT_2161: EX28DRAFT_2161 - P pilus assembly protein, pilin FimA, at 2,185,035 to 2,185,556
_2161
EX28DRAFT_2162: EX28DRAFT_2162 - hypothetical protein, at 2,185,857 to 2,186,108
_2162
EX28DRAFT_2163: EX28DRAFT_2163 - hypothetical protein, at 2,186,228 to 2,186,866
_2163
Position (kb)
2185
2186 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2184.092 kb on + strand, within EX28DRAFT_2159 at 2184.139 kb on + strand at 2184.371 kb on + strand at 2184.576 kb on - strand, within EX28DRAFT_2160 at 2184.647 kb on - strand, within EX28DRAFT_2160 at 2184.656 kb on - strand, within EX28DRAFT_2160 at 2184.752 kb on - strand, within EX28DRAFT_2160 at 2184.932 kb on + strand at 2185.114 kb on + strand, within EX28DRAFT_2161 at 2185.114 kb on + strand, within EX28DRAFT_2161 at 2185.115 kb on - strand, within EX28DRAFT_2161 at 2185.115 kb on - strand, within EX28DRAFT_2161 at 2185.172 kb on + strand, within EX28DRAFT_2161 at 2185.191 kb on - strand, within EX28DRAFT_2161 at 2185.448 kb on + strand, within EX28DRAFT_2161 at 2185.524 kb on - strand at 2185.947 kb on + strand, within EX28DRAFT_2162 at 2186.339 kb on + strand, within EX28DRAFT_2163 at 2186.340 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.373 kb on - strand, within EX28DRAFT_2163 at 2186.402 kb on + strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.420 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163 at 2186.493 kb on - strand, within EX28DRAFT_2163
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,184,092 + EX28DRAFT_2159 0.90 -0.6 2,184,139 + -0.3 2,184,371 + -0.8 2,184,576 - EX28DRAFT_2160 0.30 +0.9 2,184,647 - EX28DRAFT_2160 0.43 -0.3 2,184,656 - EX28DRAFT_2160 0.44 +0.1 2,184,752 - EX28DRAFT_2160 0.61 -1.1 2,184,932 + -0.1 2,185,114 + EX28DRAFT_2161 0.15 +0.3 2,185,114 + EX28DRAFT_2161 0.15 +1.6 2,185,115 - EX28DRAFT_2161 0.15 +0.1 2,185,115 - EX28DRAFT_2161 0.15 +0.5 2,185,172 + EX28DRAFT_2161 0.26 +1.9 2,185,191 - EX28DRAFT_2161 0.30 -0.0 2,185,448 + EX28DRAFT_2161 0.79 +0.5 2,185,524 - -0.5 2,185,947 + EX28DRAFT_2162 0.36 -0.6 2,186,339 + EX28DRAFT_2163 0.17 -0.1 2,186,340 - EX28DRAFT_2163 0.18 +0.4 2,186,373 - EX28DRAFT_2163 0.23 +1.1 2,186,373 - EX28DRAFT_2163 0.23 -0.3 2,186,402 + EX28DRAFT_2163 0.27 +0.3 2,186,420 - EX28DRAFT_2163 0.30 +0.3 2,186,420 - EX28DRAFT_2163 0.30 +0.7 2,186,493 - EX28DRAFT_2163 0.41 +0.7 2,186,493 - EX28DRAFT_2163 0.41 -2.8 2,186,493 - EX28DRAFT_2163 0.41 +1.1
Or see this region's nucleotide sequence