Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2161

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2159 and EX28DRAFT_2160 are separated by 53 nucleotidesEX28DRAFT_2160 and EX28DRAFT_2161 are separated by 67 nucleotidesEX28DRAFT_2161 and EX28DRAFT_2162 are separated by 300 nucleotidesEX28DRAFT_2162 and EX28DRAFT_2163 are separated by 119 nucleotides EX28DRAFT_2159: EX28DRAFT_2159 - P pilus assembly protein, porin PapC, at 2,181,837 to 2,184,353 _2159 EX28DRAFT_2160: EX28DRAFT_2160 - P pilus assembly protein, pilin FimA, at 2,184,407 to 2,184,967 _2160 EX28DRAFT_2161: EX28DRAFT_2161 - P pilus assembly protein, pilin FimA, at 2,185,035 to 2,185,556 _2161 EX28DRAFT_2162: EX28DRAFT_2162 - hypothetical protein, at 2,185,857 to 2,186,108 _2162 EX28DRAFT_2163: EX28DRAFT_2163 - hypothetical protein, at 2,186,228 to 2,186,866 _2163 Position (kb) 2185 2186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2184.092 kb on + strand, within EX28DRAFT_2159at 2184.139 kb on + strandat 2184.371 kb on + strandat 2184.576 kb on - strand, within EX28DRAFT_2160at 2184.647 kb on - strand, within EX28DRAFT_2160at 2184.656 kb on - strand, within EX28DRAFT_2160at 2184.752 kb on - strand, within EX28DRAFT_2160at 2184.932 kb on + strandat 2185.114 kb on + strand, within EX28DRAFT_2161at 2185.114 kb on + strand, within EX28DRAFT_2161at 2185.115 kb on - strand, within EX28DRAFT_2161at 2185.115 kb on - strand, within EX28DRAFT_2161at 2185.172 kb on + strand, within EX28DRAFT_2161at 2185.191 kb on - strand, within EX28DRAFT_2161at 2185.448 kb on + strand, within EX28DRAFT_2161at 2185.524 kb on - strandat 2185.947 kb on + strand, within EX28DRAFT_2162at 2186.339 kb on + strand, within EX28DRAFT_2163at 2186.340 kb on - strand, within EX28DRAFT_2163at 2186.373 kb on - strand, within EX28DRAFT_2163at 2186.373 kb on - strand, within EX28DRAFT_2163at 2186.402 kb on + strand, within EX28DRAFT_2163at 2186.420 kb on - strand, within EX28DRAFT_2163at 2186.420 kb on - strand, within EX28DRAFT_2163at 2186.493 kb on - strand, within EX28DRAFT_2163at 2186.493 kb on - strand, within EX28DRAFT_2163at 2186.493 kb on - strand, within EX28DRAFT_2163

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,184,092 + EX28DRAFT_2159 0.90 -0.6
2,184,139 + -0.3
2,184,371 + -0.8
2,184,576 - EX28DRAFT_2160 0.30 +0.9
2,184,647 - EX28DRAFT_2160 0.43 -0.3
2,184,656 - EX28DRAFT_2160 0.44 +0.1
2,184,752 - EX28DRAFT_2160 0.61 -1.1
2,184,932 + -0.1
2,185,114 + EX28DRAFT_2161 0.15 +0.3
2,185,114 + EX28DRAFT_2161 0.15 +1.6
2,185,115 - EX28DRAFT_2161 0.15 +0.1
2,185,115 - EX28DRAFT_2161 0.15 +0.5
2,185,172 + EX28DRAFT_2161 0.26 +1.9
2,185,191 - EX28DRAFT_2161 0.30 -0.0
2,185,448 + EX28DRAFT_2161 0.79 +0.5
2,185,524 - -0.5
2,185,947 + EX28DRAFT_2162 0.36 -0.6
2,186,339 + EX28DRAFT_2163 0.17 -0.1
2,186,340 - EX28DRAFT_2163 0.18 +0.4
2,186,373 - EX28DRAFT_2163 0.23 +1.1
2,186,373 - EX28DRAFT_2163 0.23 -0.3
2,186,402 + EX28DRAFT_2163 0.27 +0.3
2,186,420 - EX28DRAFT_2163 0.30 +0.3
2,186,420 - EX28DRAFT_2163 0.30 +0.7
2,186,493 - EX28DRAFT_2163 0.41 +0.7
2,186,493 - EX28DRAFT_2163 0.41 -2.8
2,186,493 - EX28DRAFT_2163 0.41 +1.1

Or see this region's nucleotide sequence