Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1950

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1948 and EX28DRAFT_1949 overlap by 21 nucleotidesEX28DRAFT_1949 and EX28DRAFT_1950 overlap by 4 nucleotidesEX28DRAFT_1950 and EX28DRAFT_1951 are separated by 239 nucleotides EX28DRAFT_1948: EX28DRAFT_1948 - guanine deaminase (EC 3.5.4.3), at 1,953,546 to 1,954,862 _1948 EX28DRAFT_1949: EX28DRAFT_1949 - hydroxyisourate hydrolase, at 1,954,842 to 1,955,165 _1949 EX28DRAFT_1950: EX28DRAFT_1950 - OHCU decarboxylase, at 1,955,162 to 1,955,662 _1950 EX28DRAFT_1951: EX28DRAFT_1951 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,955,902 to 1,957,056 _1951 Position (kb) 1955 1956Strain fitness (log2 ratio) -1 0 1at 1954.563 kb on + strand, within EX28DRAFT_1948at 1954.563 kb on + strand, within EX28DRAFT_1948at 1954.564 kb on - strand, within EX28DRAFT_1948at 1954.761 kb on + strandat 1954.761 kb on + strandat 1954.762 kb on - strandat 1955.094 kb on + strand, within EX28DRAFT_1949at 1955.094 kb on + strand, within EX28DRAFT_1949at 1955.095 kb on - strand, within EX28DRAFT_1949at 1955.095 kb on - strand, within EX28DRAFT_1949at 1955.095 kb on - strand, within EX28DRAFT_1949at 1955.095 kb on - strand, within EX28DRAFT_1949at 1955.145 kb on - strandat 1955.198 kb on - strandat 1955.274 kb on - strand, within EX28DRAFT_1950at 1955.279 kb on - strand, within EX28DRAFT_1950at 1955.662 kb on + strandat 1955.662 kb on + strandat 1955.662 kb on + strandat 1955.662 kb on + strandat 1955.662 kb on + strandat 1955.663 kb on - strandat 1955.663 kb on - strandat 1955.675 kb on - strandat 1955.746 kb on - strandat 1955.803 kb on + strandat 1955.872 kb on + strandat 1955.872 kb on + strandat 1956.119 kb on - strand, within EX28DRAFT_1951at 1956.284 kb on + strand, within EX28DRAFT_1951at 1956.548 kb on - strand, within EX28DRAFT_1951

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,954,563 + EX28DRAFT_1948 0.77 -0.1
1,954,563 + EX28DRAFT_1948 0.77 +1.1
1,954,564 - EX28DRAFT_1948 0.77 -1.4
1,954,761 + +0.0
1,954,761 + -0.3
1,954,762 - -1.0
1,955,094 + EX28DRAFT_1949 0.78 +0.7
1,955,094 + EX28DRAFT_1949 0.78 +0.1
1,955,095 - EX28DRAFT_1949 0.78 -0.4
1,955,095 - EX28DRAFT_1949 0.78 +0.1
1,955,095 - EX28DRAFT_1949 0.78 +0.0
1,955,095 - EX28DRAFT_1949 0.78 +0.9
1,955,145 - -0.5
1,955,198 - -0.3
1,955,274 - EX28DRAFT_1950 0.22 +1.2
1,955,279 - EX28DRAFT_1950 0.23 -0.3
1,955,662 + -0.3
1,955,662 + +0.2
1,955,662 + +0.1
1,955,662 + +0.6
1,955,662 + -0.4
1,955,663 - -1.1
1,955,663 - +0.4
1,955,675 - +0.2
1,955,746 - +0.7
1,955,803 + -0.1
1,955,872 + +0.3
1,955,872 + -0.6
1,956,119 - EX28DRAFT_1951 0.19 +0.7
1,956,284 + EX28DRAFT_1951 0.33 -0.1
1,956,548 - EX28DRAFT_1951 0.56 -0.8

Or see this region's nucleotide sequence