Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1948 and EX28DRAFT_1949 overlap by 21 nucleotides EX28DRAFT_1949 and EX28DRAFT_1950 overlap by 4 nucleotides EX28DRAFT_1950 and EX28DRAFT_1951 are separated by 239 nucleotides
EX28DRAFT_1948: EX28DRAFT_1948 - guanine deaminase (EC 3.5.4.3), at 1,953,546 to 1,954,862
_1948
EX28DRAFT_1949: EX28DRAFT_1949 - hydroxyisourate hydrolase, at 1,954,842 to 1,955,165
_1949
EX28DRAFT_1950: EX28DRAFT_1950 - OHCU decarboxylase, at 1,955,162 to 1,955,662
_1950
EX28DRAFT_1951: EX28DRAFT_1951 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,955,902 to 1,957,056
_1951
Position (kb)
1955
1956 Strain fitness (log2 ratio)
-1
0
1 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.563 kb on + strand, within EX28DRAFT_1948 at 1954.564 kb on - strand, within EX28DRAFT_1948 at 1954.761 kb on + strand at 1954.761 kb on + strand at 1954.762 kb on - strand at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.094 kb on + strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.095 kb on - strand, within EX28DRAFT_1949 at 1955.145 kb on - strand at 1955.198 kb on - strand at 1955.274 kb on - strand, within EX28DRAFT_1950 at 1955.279 kb on - strand, within EX28DRAFT_1950 at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.662 kb on + strand at 1955.663 kb on - strand at 1955.663 kb on - strand at 1955.675 kb on - strand at 1955.746 kb on - strand at 1955.803 kb on + strand at 1955.872 kb on + strand at 1955.872 kb on + strand at 1956.119 kb on - strand, within EX28DRAFT_1951 at 1956.284 kb on + strand, within EX28DRAFT_1951 at 1956.548 kb on - strand, within EX28DRAFT_1951
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,954,563 + EX28DRAFT_1948 0.77 -0.1 1,954,563 + EX28DRAFT_1948 0.77 +1.1 1,954,564 - EX28DRAFT_1948 0.77 -1.4 1,954,761 + +0.0 1,954,761 + -0.3 1,954,762 - -1.0 1,955,094 + EX28DRAFT_1949 0.78 +0.7 1,955,094 + EX28DRAFT_1949 0.78 +0.1 1,955,095 - EX28DRAFT_1949 0.78 -0.4 1,955,095 - EX28DRAFT_1949 0.78 +0.1 1,955,095 - EX28DRAFT_1949 0.78 +0.0 1,955,095 - EX28DRAFT_1949 0.78 +0.9 1,955,145 - -0.5 1,955,198 - -0.3 1,955,274 - EX28DRAFT_1950 0.22 +1.2 1,955,279 - EX28DRAFT_1950 0.23 -0.3 1,955,662 + -0.3 1,955,662 + +0.2 1,955,662 + +0.1 1,955,662 + +0.6 1,955,662 + -0.4 1,955,663 - -1.1 1,955,663 - +0.4 1,955,675 - +0.2 1,955,746 - +0.7 1,955,803 + -0.1 1,955,872 + +0.3 1,955,872 + -0.6 1,956,119 - EX28DRAFT_1951 0.19 +0.7 1,956,284 + EX28DRAFT_1951 0.33 -0.1 1,956,548 - EX28DRAFT_1951 0.56 -0.8
Or see this region's nucleotide sequence