Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1817 and EX28DRAFT_1818 are separated by 75 nucleotides EX28DRAFT_1818 and EX28DRAFT_1819 are separated by 244 nucleotides EX28DRAFT_1819 and EX28DRAFT_1820 are separated by 59 nucleotides
EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574
_1817
EX28DRAFT_1818: EX28DRAFT_1818 - Protein of unknown function (DUF1471), at 1,837,650 to 1,837,907
_1818
EX28DRAFT_1819: EX28DRAFT_1819 - transcriptional regulator, TetR family, at 1,838,152 to 1,838,787
_1819
EX28DRAFT_1820: EX28DRAFT_1820 - Predicted outer membrane lipoprotein, at 1,838,847 to 1,839,386
_1820
Position (kb)
1837
1838 Strain fitness (log2 ratio)
-2
-1
0
1 at 1836.846 kb on + strand, within EX28DRAFT_1817 at 1836.925 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.985 kb on - strand, within EX28DRAFT_1817 at 1837.101 kb on + strand, within EX28DRAFT_1817 at 1837.104 kb on - strand, within EX28DRAFT_1817 at 1837.104 kb on - strand, within EX28DRAFT_1817 at 1837.200 kb on + strand, within EX28DRAFT_1817 at 1837.259 kb on + strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.260 kb on - strand, within EX28DRAFT_1817 at 1837.295 kb on + strand, within EX28DRAFT_1817 at 1837.326 kb on - strand, within EX28DRAFT_1817 at 1837.328 kb on + strand, within EX28DRAFT_1817 at 1837.334 kb on + strand, within EX28DRAFT_1817 at 1837.335 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.457 kb on - strand, within EX28DRAFT_1817 at 1837.616 kb on - strand at 1837.652 kb on - strand at 1837.657 kb on + strand at 1837.662 kb on - strand at 1837.686 kb on - strand, within EX28DRAFT_1818 at 1837.707 kb on - strand, within EX28DRAFT_1818 at 1837.772 kb on + strand, within EX28DRAFT_1818 at 1837.793 kb on + strand, within EX28DRAFT_1818 at 1837.794 kb on - strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.805 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.836 kb on + strand, within EX28DRAFT_1818 at 1837.914 kb on + strand at 1837.914 kb on + strand at 1837.915 kb on - strand at 1837.915 kb on - strand at 1837.966 kb on - strand at 1838.058 kb on - strand at 1838.288 kb on + strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.372 kb on - strand, within EX28DRAFT_1819 at 1838.505 kb on + strand, within EX28DRAFT_1819 at 1838.668 kb on + strand, within EX28DRAFT_1819 at 1838.740 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.827 kb on - strand at 1838.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,836,846 + EX28DRAFT_1817 0.25 -1.6 1,836,925 + EX28DRAFT_1817 0.33 -0.8 1,836,948 + EX28DRAFT_1817 0.35 +0.0 1,836,948 + EX28DRAFT_1817 0.35 +0.2 1,836,951 + EX28DRAFT_1817 0.35 -0.2 1,836,951 + EX28DRAFT_1817 0.35 -0.3 1,836,951 + EX28DRAFT_1817 0.35 -0.0 1,836,951 + EX28DRAFT_1817 0.35 +0.2 1,836,951 + EX28DRAFT_1817 0.35 +0.1 1,836,952 - EX28DRAFT_1817 0.36 +0.0 1,836,952 - EX28DRAFT_1817 0.36 +0.2 1,836,952 - EX28DRAFT_1817 0.36 +0.3 1,836,985 - EX28DRAFT_1817 0.39 +1.2 1,837,101 + EX28DRAFT_1817 0.51 -0.2 1,837,104 - EX28DRAFT_1817 0.51 -0.1 1,837,104 - EX28DRAFT_1817 0.51 +0.7 1,837,200 + EX28DRAFT_1817 0.61 +0.4 1,837,259 + EX28DRAFT_1817 0.67 +0.3 1,837,260 - EX28DRAFT_1817 0.67 -0.9 1,837,260 - EX28DRAFT_1817 0.67 +0.4 1,837,295 + EX28DRAFT_1817 0.71 -0.1 1,837,326 - EX28DRAFT_1817 0.74 +0.1 1,837,328 + EX28DRAFT_1817 0.74 -0.4 1,837,334 + EX28DRAFT_1817 0.75 +0.5 1,837,335 - EX28DRAFT_1817 0.75 +0.9 1,837,457 - EX28DRAFT_1817 0.88 +0.6 1,837,457 - EX28DRAFT_1817 0.88 +0.1 1,837,616 - +0.4 1,837,652 - +0.1 1,837,657 + +0.3 1,837,662 - +1.0 1,837,686 - EX28DRAFT_1818 0.14 +0.4 1,837,707 - EX28DRAFT_1818 0.22 +0.2 1,837,772 + EX28DRAFT_1818 0.47 +0.4 1,837,793 + EX28DRAFT_1818 0.55 -0.1 1,837,794 - EX28DRAFT_1818 0.56 -0.8 1,837,805 + EX28DRAFT_1818 0.60 +0.0 1,837,805 + EX28DRAFT_1818 0.60 +1.4 1,837,836 + EX28DRAFT_1818 0.72 +0.3 1,837,836 + EX28DRAFT_1818 0.72 +1.7 1,837,914 + +0.2 1,837,914 + +0.2 1,837,915 - +0.0 1,837,915 - +0.2 1,837,966 - +0.1 1,838,058 - -0.1 1,838,288 + EX28DRAFT_1819 0.21 -0.1 1,838,372 - EX28DRAFT_1819 0.35 -1.2 1,838,372 - EX28DRAFT_1819 0.35 -0.4 1,838,372 - EX28DRAFT_1819 0.35 +0.4 1,838,505 + EX28DRAFT_1819 0.56 -0.6 1,838,668 + EX28DRAFT_1819 0.81 -1.0 1,838,740 - -2.5 1,838,827 - +0.5 1,838,827 - -0.8 1,838,827 - -0.1 1,838,827 - -0.3 1,838,858 + +0.5
Or see this region's nucleotide sequence