Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1818

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1817 and EX28DRAFT_1818 are separated by 75 nucleotidesEX28DRAFT_1818 and EX28DRAFT_1819 are separated by 244 nucleotidesEX28DRAFT_1819 and EX28DRAFT_1820 are separated by 59 nucleotides EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574 _1817 EX28DRAFT_1818: EX28DRAFT_1818 - Protein of unknown function (DUF1471), at 1,837,650 to 1,837,907 _1818 EX28DRAFT_1819: EX28DRAFT_1819 - transcriptional regulator, TetR family, at 1,838,152 to 1,838,787 _1819 EX28DRAFT_1820: EX28DRAFT_1820 - Predicted outer membrane lipoprotein, at 1,838,847 to 1,839,386 _1820 Position (kb) 1837 1838Strain fitness (log2 ratio) -2 -1 0 1at 1836.846 kb on + strand, within EX28DRAFT_1817at 1836.925 kb on + strand, within EX28DRAFT_1817at 1836.948 kb on + strand, within EX28DRAFT_1817at 1836.948 kb on + strand, within EX28DRAFT_1817at 1836.951 kb on + strand, within EX28DRAFT_1817at 1836.951 kb on + strand, within EX28DRAFT_1817at 1836.951 kb on + strand, within EX28DRAFT_1817at 1836.951 kb on + strand, within EX28DRAFT_1817at 1836.951 kb on + strand, within EX28DRAFT_1817at 1836.952 kb on - strand, within EX28DRAFT_1817at 1836.952 kb on - strand, within EX28DRAFT_1817at 1836.952 kb on - strand, within EX28DRAFT_1817at 1836.985 kb on - strand, within EX28DRAFT_1817at 1837.101 kb on + strand, within EX28DRAFT_1817at 1837.104 kb on - strand, within EX28DRAFT_1817at 1837.104 kb on - strand, within EX28DRAFT_1817at 1837.200 kb on + strand, within EX28DRAFT_1817at 1837.259 kb on + strand, within EX28DRAFT_1817at 1837.260 kb on - strand, within EX28DRAFT_1817at 1837.260 kb on - strand, within EX28DRAFT_1817at 1837.295 kb on + strand, within EX28DRAFT_1817at 1837.326 kb on - strand, within EX28DRAFT_1817at 1837.328 kb on + strand, within EX28DRAFT_1817at 1837.334 kb on + strand, within EX28DRAFT_1817at 1837.335 kb on - strand, within EX28DRAFT_1817at 1837.457 kb on - strand, within EX28DRAFT_1817at 1837.457 kb on - strand, within EX28DRAFT_1817at 1837.616 kb on - strandat 1837.652 kb on - strandat 1837.657 kb on + strandat 1837.662 kb on - strandat 1837.686 kb on - strand, within EX28DRAFT_1818at 1837.707 kb on - strand, within EX28DRAFT_1818at 1837.772 kb on + strand, within EX28DRAFT_1818at 1837.793 kb on + strand, within EX28DRAFT_1818at 1837.794 kb on - strand, within EX28DRAFT_1818at 1837.805 kb on + strand, within EX28DRAFT_1818at 1837.805 kb on + strand, within EX28DRAFT_1818at 1837.836 kb on + strand, within EX28DRAFT_1818at 1837.836 kb on + strand, within EX28DRAFT_1818at 1837.914 kb on + strandat 1837.914 kb on + strandat 1837.915 kb on - strandat 1837.915 kb on - strandat 1837.966 kb on - strandat 1838.058 kb on - strandat 1838.288 kb on + strand, within EX28DRAFT_1819at 1838.372 kb on - strand, within EX28DRAFT_1819at 1838.372 kb on - strand, within EX28DRAFT_1819at 1838.372 kb on - strand, within EX28DRAFT_1819at 1838.505 kb on + strand, within EX28DRAFT_1819at 1838.668 kb on + strand, within EX28DRAFT_1819at 1838.740 kb on - strandat 1838.827 kb on - strandat 1838.827 kb on - strandat 1838.827 kb on - strandat 1838.827 kb on - strandat 1838.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,836,846 + EX28DRAFT_1817 0.25 -1.6
1,836,925 + EX28DRAFT_1817 0.33 -0.8
1,836,948 + EX28DRAFT_1817 0.35 +0.0
1,836,948 + EX28DRAFT_1817 0.35 +0.2
1,836,951 + EX28DRAFT_1817 0.35 -0.2
1,836,951 + EX28DRAFT_1817 0.35 -0.3
1,836,951 + EX28DRAFT_1817 0.35 -0.0
1,836,951 + EX28DRAFT_1817 0.35 +0.2
1,836,951 + EX28DRAFT_1817 0.35 +0.1
1,836,952 - EX28DRAFT_1817 0.36 +0.0
1,836,952 - EX28DRAFT_1817 0.36 +0.2
1,836,952 - EX28DRAFT_1817 0.36 +0.3
1,836,985 - EX28DRAFT_1817 0.39 +1.2
1,837,101 + EX28DRAFT_1817 0.51 -0.2
1,837,104 - EX28DRAFT_1817 0.51 -0.1
1,837,104 - EX28DRAFT_1817 0.51 +0.7
1,837,200 + EX28DRAFT_1817 0.61 +0.4
1,837,259 + EX28DRAFT_1817 0.67 +0.3
1,837,260 - EX28DRAFT_1817 0.67 -0.9
1,837,260 - EX28DRAFT_1817 0.67 +0.4
1,837,295 + EX28DRAFT_1817 0.71 -0.1
1,837,326 - EX28DRAFT_1817 0.74 +0.1
1,837,328 + EX28DRAFT_1817 0.74 -0.4
1,837,334 + EX28DRAFT_1817 0.75 +0.5
1,837,335 - EX28DRAFT_1817 0.75 +0.9
1,837,457 - EX28DRAFT_1817 0.88 +0.6
1,837,457 - EX28DRAFT_1817 0.88 +0.1
1,837,616 - +0.4
1,837,652 - +0.1
1,837,657 + +0.3
1,837,662 - +1.0
1,837,686 - EX28DRAFT_1818 0.14 +0.4
1,837,707 - EX28DRAFT_1818 0.22 +0.2
1,837,772 + EX28DRAFT_1818 0.47 +0.4
1,837,793 + EX28DRAFT_1818 0.55 -0.1
1,837,794 - EX28DRAFT_1818 0.56 -0.8
1,837,805 + EX28DRAFT_1818 0.60 +0.0
1,837,805 + EX28DRAFT_1818 0.60 +1.4
1,837,836 + EX28DRAFT_1818 0.72 +0.3
1,837,836 + EX28DRAFT_1818 0.72 +1.7
1,837,914 + +0.2
1,837,914 + +0.2
1,837,915 - +0.0
1,837,915 - +0.2
1,837,966 - +0.1
1,838,058 - -0.1
1,838,288 + EX28DRAFT_1819 0.21 -0.1
1,838,372 - EX28DRAFT_1819 0.35 -1.2
1,838,372 - EX28DRAFT_1819 0.35 -0.4
1,838,372 - EX28DRAFT_1819 0.35 +0.4
1,838,505 + EX28DRAFT_1819 0.56 -0.6
1,838,668 + EX28DRAFT_1819 0.81 -1.0
1,838,740 - -2.5
1,838,827 - +0.5
1,838,827 - -0.8
1,838,827 - -0.1
1,838,827 - -0.3
1,838,858 + +0.5

Or see this region's nucleotide sequence