Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1660

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1658 and EX28DRAFT_1659 are separated by 30 nucleotidesEX28DRAFT_1659 and EX28DRAFT_1660 are separated by 237 nucleotidesEX28DRAFT_1660 and EX28DRAFT_1661 are separated by 36 nucleotidesEX28DRAFT_1661 and EX28DRAFT_1662 are separated by 3 nucleotidesEX28DRAFT_1662 and EX28DRAFT_1663 are separated by 4 nucleotidesEX28DRAFT_1663 and EX28DRAFT_1664 are separated by 118 nucleotides EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838 _1658 EX28DRAFT_1659: EX28DRAFT_1659 - riboflavin synthase alpha chain (EC 2.5.1.9), at 1,675,869 to 1,676,513 _1659 EX28DRAFT_1660: EX28DRAFT_1660 - putative efflux protein, MATE family, at 1,676,751 to 1,678,112 _1660 EX28DRAFT_1661: EX28DRAFT_1661 - hypothetical protein, at 1,678,149 to 1,678,262 _1661 EX28DRAFT_1662: EX28DRAFT_1662 - tRNA, at 1,678,266 to 1,678,342 _1662 EX28DRAFT_1663: EX28DRAFT_1663 - tRNA, at 1,678,347 to 1,678,423 _1663 EX28DRAFT_1664: EX28DRAFT_1664 - Uncharacterized protein conserved in bacteria, at 1,678,542 to 1,680,137 _1664 Position (kb) 1676 1677 1678 1679Strain fitness (log2 ratio) -1 0 1 2at 1675.795 kb on + strandat 1675.796 kb on - strandat 1675.822 kb on + strandat 1675.863 kb on + strandat 1675.896 kb on + strandat 1676.628 kb on + strandat 1676.628 kb on + strandat 1676.629 kb on - strandat 1676.629 kb on - strandat 1676.629 kb on - strandat 1676.629 kb on - strandat 1676.632 kb on + strandat 1676.647 kb on - strandat 1676.647 kb on - strandat 1676.651 kb on + strandat 1676.652 kb on - strandat 1676.716 kb on - strandat 1676.726 kb on + strandat 1676.727 kb on - strandat 1676.770 kb on + strandat 1676.771 kb on - strandat 1676.783 kb on + strandat 1676.784 kb on - strandat 1677.089 kb on + strand, within EX28DRAFT_1660at 1677.090 kb on - strand, within EX28DRAFT_1660at 1677.113 kb on + strand, within EX28DRAFT_1660at 1677.113 kb on + strand, within EX28DRAFT_1660at 1677.114 kb on - strand, within EX28DRAFT_1660at 1677.460 kb on + strand, within EX28DRAFT_1660at 1677.460 kb on + strand, within EX28DRAFT_1660at 1677.461 kb on - strand, within EX28DRAFT_1660at 1677.868 kb on + strand, within EX28DRAFT_1660at 1677.881 kb on + strand, within EX28DRAFT_1660at 1677.906 kb on - strand, within EX28DRAFT_1660at 1677.949 kb on - strand, within EX28DRAFT_1660at 1678.041 kb on - strandat 1678.482 kb on - strandat 1678.584 kb on + strandat 1678.585 kb on - strandat 1678.587 kb on - strandat 1678.671 kb on + strandat 1678.671 kb on + strandat 1678.672 kb on - strandat 1678.685 kb on + strandat 1678.746 kb on + strand, within EX28DRAFT_1664at 1678.746 kb on + strand, within EX28DRAFT_1664at 1678.883 kb on - strand, within EX28DRAFT_1664

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,675,795 + +0.4
1,675,796 - +0.5
1,675,822 + -0.3
1,675,863 + -0.1
1,675,896 + -0.6
1,676,628 + +0.8
1,676,628 + -0.5
1,676,629 - -1.4
1,676,629 - +0.6
1,676,629 - +0.1
1,676,629 - -0.0
1,676,632 + -0.5
1,676,647 - -0.1
1,676,647 - -0.2
1,676,651 + -0.1
1,676,652 - +0.4
1,676,716 - -0.6
1,676,726 + -0.9
1,676,727 - -0.6
1,676,770 + +1.3
1,676,771 - -0.3
1,676,783 + -1.5
1,676,784 - -0.0
1,677,089 + EX28DRAFT_1660 0.25 +0.2
1,677,090 - EX28DRAFT_1660 0.25 -0.1
1,677,113 + EX28DRAFT_1660 0.27 +0.3
1,677,113 + EX28DRAFT_1660 0.27 +0.4
1,677,114 - EX28DRAFT_1660 0.27 +0.1
1,677,460 + EX28DRAFT_1660 0.52 +0.3
1,677,460 + EX28DRAFT_1660 0.52 +0.7
1,677,461 - EX28DRAFT_1660 0.52 -1.6
1,677,868 + EX28DRAFT_1660 0.82 +0.7
1,677,881 + EX28DRAFT_1660 0.83 -0.4
1,677,906 - EX28DRAFT_1660 0.85 -0.0
1,677,949 - EX28DRAFT_1660 0.88 +0.2
1,678,041 - -0.6
1,678,482 - +0.9
1,678,584 + +0.9
1,678,585 - +2.3
1,678,587 - -0.0
1,678,671 + -0.8
1,678,671 + +0.8
1,678,672 - +0.1
1,678,685 + +0.0
1,678,746 + EX28DRAFT_1664 0.13 +0.7
1,678,746 + EX28DRAFT_1664 0.13 -1.0
1,678,883 - EX28DRAFT_1664 0.21 +0.7

Or see this region's nucleotide sequence