Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1628

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1626 and EX28DRAFT_1627 are separated by 10 nucleotidesEX28DRAFT_1627 and EX28DRAFT_1628 are separated by 2 nucleotidesEX28DRAFT_1628 and EX28DRAFT_1629 overlap by 4 nucleotides EX28DRAFT_1626: EX28DRAFT_1626 - electron transport complex, RnfABCDGE type, D subunit, at 1,644,045 to 1,645,097 _1626 EX28DRAFT_1627: EX28DRAFT_1627 - electron transport complex, RnfABCDGE type, G subunit, at 1,645,108 to 1,645,728 _1627 EX28DRAFT_1628: EX28DRAFT_1628 - electron transport complex, RnfABCDGE type, E subunit, at 1,645,731 to 1,646,417 _1628 EX28DRAFT_1629: EX28DRAFT_1629 - DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-), at 1,646,414 to 1,647,049 _1629 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -3 -2 -1 0 1at 1644.887 kb on - strand, within EX28DRAFT_1626at 1644.887 kb on - strand, within EX28DRAFT_1626at 1645.063 kb on - strandat 1645.112 kb on + strandat 1645.752 kb on - strandat 1646.335 kb on + strand, within EX28DRAFT_1628at 1646.361 kb on - strandat 1646.619 kb on + strand, within EX28DRAFT_1629at 1646.619 kb on + strand, within EX28DRAFT_1629at 1646.636 kb on + strand, within EX28DRAFT_1629at 1646.724 kb on + strand, within EX28DRAFT_1629at 1646.725 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.834 kb on - strand, within EX28DRAFT_1629at 1646.857 kb on + strand, within EX28DRAFT_1629at 1646.858 kb on - strand, within EX28DRAFT_1629at 1646.904 kb on + strand, within EX28DRAFT_1629at 1646.926 kb on + strand, within EX28DRAFT_1629at 1646.966 kb on + strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1646.969 kb on - strand, within EX28DRAFT_1629at 1647.105 kb on - strandat 1647.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,644,887 - EX28DRAFT_1626 0.80 -0.6
1,644,887 - EX28DRAFT_1626 0.80 -0.4
1,645,063 - +0.8
1,645,112 + +0.1
1,645,752 - -3.3
1,646,335 + EX28DRAFT_1628 0.88 +0.4
1,646,361 - -0.1
1,646,619 + EX28DRAFT_1629 0.32 +0.4
1,646,619 + EX28DRAFT_1629 0.32 +0.2
1,646,636 + EX28DRAFT_1629 0.35 -0.2
1,646,724 + EX28DRAFT_1629 0.49 -1.2
1,646,725 - EX28DRAFT_1629 0.49 +0.6
1,646,834 - EX28DRAFT_1629 0.66 +0.9
1,646,834 - EX28DRAFT_1629 0.66 +0.9
1,646,834 - EX28DRAFT_1629 0.66 +0.5
1,646,857 + EX28DRAFT_1629 0.70 -1.9
1,646,858 - EX28DRAFT_1629 0.70 -1.7
1,646,904 + EX28DRAFT_1629 0.77 +0.3
1,646,926 + EX28DRAFT_1629 0.81 -0.5
1,646,966 + EX28DRAFT_1629 0.87 +1.3
1,646,969 - EX28DRAFT_1629 0.87 -0.1
1,646,969 - EX28DRAFT_1629 0.87 -0.0
1,646,969 - EX28DRAFT_1629 0.87 -0.6
1,647,105 - -0.9
1,647,105 - -0.2

Or see this region's nucleotide sequence