Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1488 and EX28DRAFT_1489 are separated by 8 nucleotides EX28DRAFT_1489 and EX28DRAFT_1490 overlap by 1 nucleotides EX28DRAFT_1490 and EX28DRAFT_1491 are separated by 102 nucleotides
EX28DRAFT_1488: EX28DRAFT_1488 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 1,502,248 to 1,503,147
_1488
EX28DRAFT_1489: EX28DRAFT_1489 - ABC-type proline/glycine betaine transport systems, permease component, at 1,503,156 to 1,503,803
_1489
EX28DRAFT_1490: EX28DRAFT_1490 - glycine betaine/L-proline transport ATP binding subunit, at 1,503,803 to 1,504,951
_1490
EX28DRAFT_1491: EX28DRAFT_1491 - Chloride channel protein EriC, at 1,505,054 to 1,506,364
_1491
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-2
-1
0
1 at 1502.845 kb on + strand, within EX28DRAFT_1488 at 1502.846 kb on - strand, within EX28DRAFT_1488 at 1502.848 kb on - strand, within EX28DRAFT_1488 at 1502.887 kb on + strand, within EX28DRAFT_1488 at 1503.171 kb on + strand at 1503.807 kb on + strand at 1503.807 kb on + strand at 1503.807 kb on + strand at 1504.052 kb on + strand, within EX28DRAFT_1490 at 1504.052 kb on + strand, within EX28DRAFT_1490 at 1504.135 kb on + strand, within EX28DRAFT_1490 at 1504.612 kb on + strand, within EX28DRAFT_1490 at 1504.649 kb on - strand, within EX28DRAFT_1490 at 1504.815 kb on - strand, within EX28DRAFT_1490 at 1504.826 kb on - strand, within EX28DRAFT_1490 at 1504.886 kb on + strand at 1504.886 kb on + strand at 1504.887 kb on - strand at 1504.888 kb on + strand at 1504.899 kb on - strand at 1505.024 kb on + strand at 1505.024 kb on + strand at 1505.029 kb on + strand at 1505.030 kb on - strand at 1505.043 kb on - strand at 1505.059 kb on - strand at 1505.069 kb on - strand at 1505.072 kb on + strand at 1505.073 kb on - strand at 1505.073 kb on - strand at 1505.168 kb on + strand at 1505.342 kb on + strand, within EX28DRAFT_1491 at 1505.570 kb on + strand, within EX28DRAFT_1491 at 1505.571 kb on - strand, within EX28DRAFT_1491
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,502,845 + EX28DRAFT_1488 0.66 -1.2 1,502,846 - EX28DRAFT_1488 0.66 -0.4 1,502,848 - EX28DRAFT_1488 0.67 -0.0 1,502,887 + EX28DRAFT_1488 0.71 -2.0 1,503,171 + +0.4 1,503,807 + +0.6 1,503,807 + -1.0 1,503,807 + -1.2 1,504,052 + EX28DRAFT_1490 0.22 +0.0 1,504,052 + EX28DRAFT_1490 0.22 +0.1 1,504,135 + EX28DRAFT_1490 0.29 +0.1 1,504,612 + EX28DRAFT_1490 0.70 +0.2 1,504,649 - EX28DRAFT_1490 0.74 +0.2 1,504,815 - EX28DRAFT_1490 0.88 +0.3 1,504,826 - EX28DRAFT_1490 0.89 +0.7 1,504,886 + -0.1 1,504,886 + +0.3 1,504,887 - -0.1 1,504,888 + +0.5 1,504,899 - +0.9 1,505,024 + +0.0 1,505,024 + -0.2 1,505,029 + -0.4 1,505,030 - -1.9 1,505,043 - +1.1 1,505,059 - +0.6 1,505,069 - -0.5 1,505,072 + +0.2 1,505,073 - +1.0 1,505,073 - -0.7 1,505,168 + +0.9 1,505,342 + EX28DRAFT_1491 0.22 +0.1 1,505,570 + EX28DRAFT_1491 0.39 -1.2 1,505,571 - EX28DRAFT_1491 0.39 +0.3
Or see this region's nucleotide sequence