Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1450

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1449 and EX28DRAFT_1450 are separated by 142 nucleotidesEX28DRAFT_1450 and EX28DRAFT_1451 are separated by 91 nucleotidesEX28DRAFT_1451 and EX28DRAFT_1452 are separated by 33 nucleotides EX28DRAFT_1449: EX28DRAFT_1449 - Zn-dependent oligopeptidases, at 1,462,300 to 1,464,333 _1449 EX28DRAFT_1450: EX28DRAFT_1450 - Short-chain alcohol dehydrogenase of unknown specificity, at 1,464,476 to 1,465,222 _1450 EX28DRAFT_1451: EX28DRAFT_1451 - Transcriptional regulators, at 1,465,314 to 1,466,000 _1451 EX28DRAFT_1452: EX28DRAFT_1452 - Universal stress protein UspA and related nucleotide-binding proteins, at 1,466,034 to 1,466,465 _1452 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -1 0 1 2at 1464.074 kb on + strand, within EX28DRAFT_1449at 1464.251 kb on + strandat 1464.368 kb on - strandat 1464.437 kb on + strandat 1464.445 kb on + strandat 1464.556 kb on + strand, within EX28DRAFT_1450at 1464.809 kb on + strand, within EX28DRAFT_1450at 1464.809 kb on + strand, within EX28DRAFT_1450at 1464.809 kb on + strand, within EX28DRAFT_1450at 1464.809 kb on + strand, within EX28DRAFT_1450at 1464.810 kb on - strand, within EX28DRAFT_1450at 1464.810 kb on - strand, within EX28DRAFT_1450at 1464.811 kb on + strand, within EX28DRAFT_1450at 1464.868 kb on + strand, within EX28DRAFT_1450at 1464.914 kb on + strand, within EX28DRAFT_1450at 1464.961 kb on + strand, within EX28DRAFT_1450at 1465.162 kb on + strandat 1465.162 kb on + strandat 1465.162 kb on + strandat 1465.221 kb on - strandat 1465.276 kb on + strandat 1465.276 kb on + strandat 1465.276 kb on + strandat 1465.276 kb on + strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.385 kb on + strand, within EX28DRAFT_1451at 1465.481 kb on + strand, within EX28DRAFT_1451at 1465.485 kb on - strand, within EX28DRAFT_1451at 1465.533 kb on + strand, within EX28DRAFT_1451at 1465.547 kb on - strand, within EX28DRAFT_1451at 1465.625 kb on + strand, within EX28DRAFT_1451at 1465.626 kb on - strand, within EX28DRAFT_1451at 1465.644 kb on + strand, within EX28DRAFT_1451at 1465.645 kb on - strand, within EX28DRAFT_1451at 1465.692 kb on - strand, within EX28DRAFT_1451at 1465.815 kb on + strand, within EX28DRAFT_1451at 1465.816 kb on - strand, within EX28DRAFT_1451at 1465.871 kb on + strand, within EX28DRAFT_1451at 1465.976 kb on + strandat 1465.998 kb on + strandat 1465.998 kb on + strandat 1465.999 kb on - strandat 1466.001 kb on + strandat 1466.172 kb on - strand, within EX28DRAFT_1452

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,464,074 + EX28DRAFT_1449 0.87 +0.4
1,464,251 + -1.4
1,464,368 - +0.8
1,464,437 + +0.4
1,464,445 + +0.3
1,464,556 + EX28DRAFT_1450 0.11 -0.9
1,464,809 + EX28DRAFT_1450 0.45 +1.0
1,464,809 + EX28DRAFT_1450 0.45 +0.0
1,464,809 + EX28DRAFT_1450 0.45 +1.6
1,464,809 + EX28DRAFT_1450 0.45 -0.4
1,464,810 - EX28DRAFT_1450 0.45 +1.1
1,464,810 - EX28DRAFT_1450 0.45 +0.7
1,464,811 + EX28DRAFT_1450 0.45 -1.0
1,464,868 + EX28DRAFT_1450 0.52 -0.1
1,464,914 + EX28DRAFT_1450 0.59 +1.9
1,464,961 + EX28DRAFT_1450 0.65 +0.7
1,465,162 + +0.2
1,465,162 + +0.8
1,465,162 + +0.8
1,465,221 - +0.1
1,465,276 + -0.3
1,465,276 + +0.5
1,465,276 + +0.4
1,465,276 + +2.0
1,465,277 - +0.5
1,465,277 - -0.4
1,465,385 + EX28DRAFT_1451 0.10 -0.6
1,465,481 + EX28DRAFT_1451 0.24 -0.1
1,465,485 - EX28DRAFT_1451 0.25 +0.1
1,465,533 + EX28DRAFT_1451 0.32 -1.4
1,465,547 - EX28DRAFT_1451 0.34 -0.4
1,465,625 + EX28DRAFT_1451 0.45 -0.2
1,465,626 - EX28DRAFT_1451 0.45 -0.7
1,465,644 + EX28DRAFT_1451 0.48 +0.3
1,465,645 - EX28DRAFT_1451 0.48 -0.7
1,465,692 - EX28DRAFT_1451 0.55 -0.4
1,465,815 + EX28DRAFT_1451 0.73 -0.1
1,465,816 - EX28DRAFT_1451 0.73 +1.0
1,465,871 + EX28DRAFT_1451 0.81 +0.8
1,465,976 + -0.0
1,465,998 + +0.2
1,465,998 + +0.3
1,465,999 - -0.5
1,466,001 + +1.0
1,466,172 - EX28DRAFT_1452 0.32 +0.0

Or see this region's nucleotide sequence