Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1404

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1402 and EX28DRAFT_1403 are separated by 107 nucleotidesEX28DRAFT_1403 and EX28DRAFT_1404 are separated by 329 nucleotidesEX28DRAFT_1404 and EX28DRAFT_1405 are separated by 165 nucleotidesEX28DRAFT_1405 and EX28DRAFT_1406 are separated by 1 nucleotides EX28DRAFT_1402: EX28DRAFT_1402 - Glyoxalase-like domain, at 1,412,324 to 1,412,761 _1402 EX28DRAFT_1403: EX28DRAFT_1403 - Acetyltransferases, at 1,412,869 to 1,413,354 _1403 EX28DRAFT_1404: EX28DRAFT_1404 - Predicted kinase, at 1,413,684 to 1,414,190 _1404 EX28DRAFT_1405: EX28DRAFT_1405 - Glutathione peroxidase, at 1,414,356 to 1,414,838 _1405 EX28DRAFT_1406: EX28DRAFT_1406 - Uncharacterized protein conserved in bacteria, at 1,414,840 to 1,415,328 _1406 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1412.833 kb on - strandat 1412.856 kb on - strandat 1412.856 kb on - strandat 1412.896 kb on + strandat 1412.921 kb on + strand, within EX28DRAFT_1403at 1412.921 kb on + strand, within EX28DRAFT_1403at 1412.921 kb on + strand, within EX28DRAFT_1403at 1412.922 kb on - strand, within EX28DRAFT_1403at 1412.922 kb on - strand, within EX28DRAFT_1403at 1412.925 kb on + strand, within EX28DRAFT_1403at 1412.926 kb on - strand, within EX28DRAFT_1403at 1412.938 kb on - strand, within EX28DRAFT_1403at 1413.010 kb on + strand, within EX28DRAFT_1403at 1413.010 kb on + strand, within EX28DRAFT_1403at 1413.010 kb on + strand, within EX28DRAFT_1403at 1413.011 kb on - strand, within EX28DRAFT_1403at 1413.042 kb on + strand, within EX28DRAFT_1403at 1413.140 kb on + strand, within EX28DRAFT_1403at 1413.140 kb on + strand, within EX28DRAFT_1403at 1413.141 kb on - strand, within EX28DRAFT_1403at 1413.169 kb on + strand, within EX28DRAFT_1403at 1413.204 kb on + strand, within EX28DRAFT_1403at 1413.205 kb on - strand, within EX28DRAFT_1403at 1413.229 kb on - strand, within EX28DRAFT_1403at 1413.240 kb on - strand, within EX28DRAFT_1403at 1413.281 kb on + strand, within EX28DRAFT_1403at 1413.285 kb on - strand, within EX28DRAFT_1403at 1413.410 kb on + strandat 1413.413 kb on - strandat 1413.451 kb on - strandat 1413.461 kb on + strandat 1413.515 kb on - strandat 1413.592 kb on + strandat 1413.593 kb on - strandat 1413.734 kb on - strandat 1413.800 kb on - strand, within EX28DRAFT_1404at 1413.856 kb on + strand, within EX28DRAFT_1404at 1413.856 kb on + strand, within EX28DRAFT_1404at 1413.865 kb on - strand, within EX28DRAFT_1404at 1413.874 kb on - strand, within EX28DRAFT_1404at 1413.919 kb on + strand, within EX28DRAFT_1404at 1413.996 kb on - strand, within EX28DRAFT_1404at 1413.998 kb on + strand, within EX28DRAFT_1404at 1414.030 kb on - strand, within EX28DRAFT_1404at 1414.051 kb on + strand, within EX28DRAFT_1404at 1414.051 kb on + strand, within EX28DRAFT_1404at 1414.052 kb on - strand, within EX28DRAFT_1404at 1414.056 kb on - strand, within EX28DRAFT_1404at 1414.246 kb on + strandat 1414.254 kb on + strandat 1414.254 kb on + strandat 1414.255 kb on - strandat 1414.264 kb on + strandat 1414.264 kb on + strandat 1414.265 kb on - strandat 1414.265 kb on - strandat 1414.265 kb on - strandat 1414.274 kb on + strandat 1414.275 kb on - strandat 1414.336 kb on - strandat 1414.336 kb on - strandat 1414.461 kb on - strand, within EX28DRAFT_1405at 1414.591 kb on + strand, within EX28DRAFT_1405at 1414.669 kb on - strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.693 kb on + strand, within EX28DRAFT_1405at 1414.694 kb on - strand, within EX28DRAFT_1405at 1414.694 kb on - strand, within EX28DRAFT_1405at 1414.715 kb on - strand, within EX28DRAFT_1405at 1414.715 kb on - strand, within EX28DRAFT_1405at 1414.791 kb on - strandat 1414.841 kb on + strandat 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.934 kb on + strand, within EX28DRAFT_1406at 1414.935 kb on - strand, within EX28DRAFT_1406at 1414.935 kb on - strand, within EX28DRAFT_1406at 1414.938 kb on + strand, within EX28DRAFT_1406at 1414.966 kb on - strand, within EX28DRAFT_1406at 1415.059 kb on - strand, within EX28DRAFT_1406at 1415.063 kb on + strand, within EX28DRAFT_1406at 1415.063 kb on + strand, within EX28DRAFT_1406at 1415.124 kb on + strand, within EX28DRAFT_1406at 1415.125 kb on - strand, within EX28DRAFT_1406at 1415.129 kb on - strand, within EX28DRAFT_1406at 1415.138 kb on + strand, within EX28DRAFT_1406at 1415.139 kb on - strand, within EX28DRAFT_1406at 1415.160 kb on + strand, within EX28DRAFT_1406at 1415.160 kb on + strand, within EX28DRAFT_1406at 1415.179 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406at 1415.190 kb on - strand, within EX28DRAFT_1406

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,412,833 - -0.6
1,412,856 - +0.5
1,412,856 - -0.1
1,412,896 + -0.6
1,412,921 + EX28DRAFT_1403 0.11 -0.5
1,412,921 + EX28DRAFT_1403 0.11 -1.6
1,412,921 + EX28DRAFT_1403 0.11 -0.4
1,412,922 - EX28DRAFT_1403 0.11 -0.3
1,412,922 - EX28DRAFT_1403 0.11 +0.6
1,412,925 + EX28DRAFT_1403 0.12 -0.2
1,412,926 - EX28DRAFT_1403 0.12 +0.4
1,412,938 - EX28DRAFT_1403 0.14 -1.3
1,413,010 + EX28DRAFT_1403 0.29 +0.1
1,413,010 + EX28DRAFT_1403 0.29 -0.3
1,413,010 + EX28DRAFT_1403 0.29 +1.2
1,413,011 - EX28DRAFT_1403 0.29 +0.1
1,413,042 + EX28DRAFT_1403 0.36 -1.1
1,413,140 + EX28DRAFT_1403 0.56 -0.4
1,413,140 + EX28DRAFT_1403 0.56 +0.2
1,413,141 - EX28DRAFT_1403 0.56 +1.2
1,413,169 + EX28DRAFT_1403 0.62 +2.3
1,413,204 + EX28DRAFT_1403 0.69 -0.0
1,413,205 - EX28DRAFT_1403 0.69 +0.5
1,413,229 - EX28DRAFT_1403 0.74 +0.5
1,413,240 - EX28DRAFT_1403 0.76 -1.1
1,413,281 + EX28DRAFT_1403 0.85 -0.7
1,413,285 - EX28DRAFT_1403 0.86 -1.0
1,413,410 + +1.2
1,413,413 - -0.1
1,413,451 - +0.1
1,413,461 + -1.4
1,413,515 - -1.3
1,413,592 + -0.3
1,413,593 - -0.4
1,413,734 - +0.0
1,413,800 - EX28DRAFT_1404 0.23 +1.6
1,413,856 + EX28DRAFT_1404 0.34 -1.1
1,413,856 + EX28DRAFT_1404 0.34 -2.7
1,413,865 - EX28DRAFT_1404 0.36 -1.1
1,413,874 - EX28DRAFT_1404 0.37 +1.6
1,413,919 + EX28DRAFT_1404 0.46 -1.1
1,413,996 - EX28DRAFT_1404 0.62 -0.7
1,413,998 + EX28DRAFT_1404 0.62 -0.8
1,414,030 - EX28DRAFT_1404 0.68 -0.8
1,414,051 + EX28DRAFT_1404 0.72 -0.7
1,414,051 + EX28DRAFT_1404 0.72 +0.2
1,414,052 - EX28DRAFT_1404 0.73 -0.1
1,414,056 - EX28DRAFT_1404 0.73 +0.2
1,414,246 + -0.3
1,414,254 + -2.5
1,414,254 + -1.3
1,414,255 - -1.4
1,414,264 + +0.2
1,414,264 + +0.4
1,414,265 - +0.4
1,414,265 - +0.5
1,414,265 - +0.4
1,414,274 + -0.3
1,414,275 - +1.0
1,414,336 - -1.3
1,414,336 - +0.0
1,414,461 - EX28DRAFT_1405 0.22 +0.6
1,414,591 + EX28DRAFT_1405 0.49 +0.6
1,414,669 - EX28DRAFT_1405 0.65 +0.2
1,414,693 + EX28DRAFT_1405 0.70 +1.2
1,414,693 + EX28DRAFT_1405 0.70 +1.4
1,414,693 + EX28DRAFT_1405 0.70 +0.0
1,414,693 + EX28DRAFT_1405 0.70 +0.2
1,414,694 - EX28DRAFT_1405 0.70 +0.4
1,414,694 - EX28DRAFT_1405 0.70 +0.3
1,414,715 - EX28DRAFT_1405 0.74 -0.3
1,414,715 - EX28DRAFT_1405 0.74 -3.3
1,414,791 - -0.4
1,414,841 + -0.7
1,414,934 + EX28DRAFT_1406 0.19 -0.8
1,414,934 + EX28DRAFT_1406 0.19 -0.0
1,414,934 + EX28DRAFT_1406 0.19 +1.5
1,414,934 + EX28DRAFT_1406 0.19 -0.0
1,414,935 - EX28DRAFT_1406 0.19 -1.0
1,414,935 - EX28DRAFT_1406 0.19 -2.7
1,414,938 + EX28DRAFT_1406 0.20 +0.9
1,414,966 - EX28DRAFT_1406 0.26 -1.9
1,415,059 - EX28DRAFT_1406 0.45 +0.4
1,415,063 + EX28DRAFT_1406 0.46 +0.4
1,415,063 + EX28DRAFT_1406 0.46 +0.5
1,415,124 + EX28DRAFT_1406 0.58 -1.3
1,415,125 - EX28DRAFT_1406 0.58 -2.7
1,415,129 - EX28DRAFT_1406 0.59 -0.7
1,415,138 + EX28DRAFT_1406 0.61 -0.4
1,415,139 - EX28DRAFT_1406 0.61 -1.4
1,415,160 + EX28DRAFT_1406 0.65 +1.0
1,415,160 + EX28DRAFT_1406 0.65 -0.4
1,415,179 - EX28DRAFT_1406 0.69 -0.1
1,415,190 - EX28DRAFT_1406 0.72 -0.0
1,415,190 - EX28DRAFT_1406 0.72 +1.0
1,415,190 - EX28DRAFT_1406 0.72 -0.3

Or see this region's nucleotide sequence