Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1280

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1277 and EX28DRAFT_1278 overlap by 4 nucleotidesEX28DRAFT_1278 and EX28DRAFT_1279 are separated by 62 nucleotidesEX28DRAFT_1279 and EX28DRAFT_1280 are separated by 47 nucleotidesEX28DRAFT_1280 and EX28DRAFT_1281 overlap by 1 nucleotidesEX28DRAFT_1281 and EX28DRAFT_1282 are separated by 2 nucleotidesEX28DRAFT_1282 and EX28DRAFT_1283 are separated by 2 nucleotidesEX28DRAFT_1283 and EX28DRAFT_1284 are separated by 9 nucleotides EX28DRAFT_1277: EX28DRAFT_1277 - hypothetical protein, at 1,296,095 to 1,296,478 _1277 EX28DRAFT_1278: EX28DRAFT_1278 - hypothetical protein, at 1,296,475 to 1,296,915 _1278 EX28DRAFT_1279: EX28DRAFT_1279 - hypothetical protein, at 1,296,978 to 1,297,265 _1279 EX28DRAFT_1280: EX28DRAFT_1280 - hypothetical protein, at 1,297,313 to 1,297,663 _1280 EX28DRAFT_1281: EX28DRAFT_1281 - hypothetical protein, at 1,297,663 to 1,297,836 _1281 EX28DRAFT_1282: EX28DRAFT_1282 - hypothetical protein, at 1,297,839 to 1,298,216 _1282 EX28DRAFT_1283: EX28DRAFT_1283 - hypothetical protein, at 1,298,219 to 1,298,620 _1283 EX28DRAFT_1284: EX28DRAFT_1284 - hypothetical protein, at 1,298,630 to 1,299,706 _1284 Position (kb) 1297 1298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.393 kb on + strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.394 kb on - strand, within EX28DRAFT_1277at 1296.513 kb on + strandat 1296.514 kb on - strandat 1296.514 kb on - strandat 1296.573 kb on - strand, within EX28DRAFT_1278at 1296.683 kb on + strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.684 kb on - strand, within EX28DRAFT_1278at 1296.782 kb on + strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.783 kb on - strand, within EX28DRAFT_1278at 1296.785 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1296.866 kb on + strand, within EX28DRAFT_1278at 1297.017 kb on - strand, within EX28DRAFT_1279at 1297.038 kb on + strand, within EX28DRAFT_1279at 1297.038 kb on + strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.039 kb on - strand, within EX28DRAFT_1279at 1297.065 kb on + strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.106 kb on - strand, within EX28DRAFT_1279at 1297.136 kb on - strand, within EX28DRAFT_1279at 1297.158 kb on - strand, within EX28DRAFT_1279at 1297.169 kb on + strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.170 kb on - strand, within EX28DRAFT_1279at 1297.171 kb on + strand, within EX28DRAFT_1279at 1297.172 kb on - strand, within EX28DRAFT_1279at 1297.172 kb on - strand, within EX28DRAFT_1279at 1297.253 kb on - strandat 1297.270 kb on + strandat 1297.271 kb on - strandat 1297.298 kb on + strandat 1297.361 kb on - strand, within EX28DRAFT_1280at 1297.443 kb on + strand, within EX28DRAFT_1280at 1297.444 kb on - strand, within EX28DRAFT_1280at 1297.444 kb on - strand, within EX28DRAFT_1280at 1297.636 kb on + strandat 1297.639 kb on - strandat 1297.748 kb on + strand, within EX28DRAFT_1281at 1297.818 kb on + strand, within EX28DRAFT_1281at 1297.818 kb on + strand, within EX28DRAFT_1281at 1297.946 kb on + strand, within EX28DRAFT_1282at 1297.947 kb on - strand, within EX28DRAFT_1282at 1297.964 kb on - strand, within EX28DRAFT_1282at 1298.051 kb on - strand, within EX28DRAFT_1282at 1298.083 kb on + strand, within EX28DRAFT_1282at 1298.237 kb on - strandat 1298.545 kb on - strand, within EX28DRAFT_1283at 1298.621 kb on - strandat 1298.621 kb on - strandat 1298.621 kb on - strandat 1298.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,296,393 + EX28DRAFT_1277 0.78 +0.5
1,296,393 + EX28DRAFT_1277 0.78 -0.3
1,296,394 - EX28DRAFT_1277 0.78 +1.8
1,296,394 - EX28DRAFT_1277 0.78 +0.4
1,296,394 - EX28DRAFT_1277 0.78 -0.1
1,296,513 + -0.1
1,296,514 - +0.2
1,296,514 - +0.2
1,296,573 - EX28DRAFT_1278 0.22 -0.7
1,296,683 + EX28DRAFT_1278 0.47 -0.5
1,296,684 - EX28DRAFT_1278 0.47 +1.6
1,296,684 - EX28DRAFT_1278 0.47 -1.2
1,296,782 + EX28DRAFT_1278 0.70 -2.1
1,296,783 - EX28DRAFT_1278 0.70 -1.2
1,296,783 - EX28DRAFT_1278 0.70 -0.5
1,296,785 + EX28DRAFT_1278 0.70 +0.6
1,296,866 + EX28DRAFT_1278 0.89 -4.2
1,296,866 + EX28DRAFT_1278 0.89 +0.8
1,297,017 - EX28DRAFT_1279 0.14 +0.5
1,297,038 + EX28DRAFT_1279 0.21 -0.2
1,297,038 + EX28DRAFT_1279 0.21 -1.7
1,297,039 - EX28DRAFT_1279 0.21 -0.1
1,297,039 - EX28DRAFT_1279 0.21 +0.1
1,297,039 - EX28DRAFT_1279 0.21 -0.9
1,297,039 - EX28DRAFT_1279 0.21 +0.5
1,297,039 - EX28DRAFT_1279 0.21 +1.8
1,297,065 + EX28DRAFT_1279 0.30 +0.6
1,297,106 - EX28DRAFT_1279 0.44 +2.1
1,297,106 - EX28DRAFT_1279 0.44 -0.0
1,297,106 - EX28DRAFT_1279 0.44 +0.9
1,297,136 - EX28DRAFT_1279 0.55 +0.4
1,297,158 - EX28DRAFT_1279 0.62 +0.4
1,297,169 + EX28DRAFT_1279 0.66 -0.5
1,297,170 - EX28DRAFT_1279 0.67 +0.6
1,297,170 - EX28DRAFT_1279 0.67 +1.3
1,297,170 - EX28DRAFT_1279 0.67 -0.4
1,297,171 + EX28DRAFT_1279 0.67 -0.5
1,297,172 - EX28DRAFT_1279 0.67 -0.5
1,297,172 - EX28DRAFT_1279 0.67 +0.4
1,297,253 - +0.3
1,297,270 + +0.1
1,297,271 - +0.6
1,297,298 + +0.5
1,297,361 - EX28DRAFT_1280 0.14 -1.5
1,297,443 + EX28DRAFT_1280 0.37 +1.1
1,297,444 - EX28DRAFT_1280 0.37 +1.0
1,297,444 - EX28DRAFT_1280 0.37 +0.2
1,297,636 + -0.1
1,297,639 - -0.0
1,297,748 + EX28DRAFT_1281 0.49 -0.9
1,297,818 + EX28DRAFT_1281 0.89 +0.1
1,297,818 + EX28DRAFT_1281 0.89 +1.0
1,297,946 + EX28DRAFT_1282 0.28 -0.0
1,297,947 - EX28DRAFT_1282 0.29 +0.1
1,297,964 - EX28DRAFT_1282 0.33 +1.1
1,298,051 - EX28DRAFT_1282 0.56 -0.9
1,298,083 + EX28DRAFT_1282 0.65 -1.1
1,298,237 - +0.9
1,298,545 - EX28DRAFT_1283 0.81 +1.2
1,298,621 - -0.6
1,298,621 - -0.1
1,298,621 - +0.1
1,298,655 + +0.4

Or see this region's nucleotide sequence