Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1198 and EX28DRAFT_1199 are separated by 98 nucleotides EX28DRAFT_1199 and EX28DRAFT_1200 overlap by 47 nucleotides EX28DRAFT_1200 and EX28DRAFT_1201 are separated by 84 nucleotides EX28DRAFT_1201 and EX28DRAFT_1202 are separated by 27 nucleotides
EX28DRAFT_1198: EX28DRAFT_1198 - NAD-dependent aldehyde dehydrogenases, at 1,218,263 to 1,219,651
_1198
EX28DRAFT_1199: EX28DRAFT_1199 - Transcriptional regulator, at 1,219,750 to 1,220,628
_1199
EX28DRAFT_1200: EX28DRAFT_1200 - Acetyltransferases, at 1,220,582 to 1,221,064
_1200
EX28DRAFT_1201: EX28DRAFT_1201 - phenazine biosynthesis protein PhzF family, at 1,221,149 to 1,221,940
_1201
EX28DRAFT_1202: EX28DRAFT_1202 - phenazine biosynthesis protein PhzF family, at 1,221,968 to 1,222,756
_1202
Position (kb)
1220
1221
1222 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1219.645 kb on - strand at 1219.645 kb on - strand at 1219.757 kb on + strand at 1220.019 kb on - strand, within EX28DRAFT_1199 at 1220.019 kb on - strand, within EX28DRAFT_1199 at 1220.151 kb on - strand, within EX28DRAFT_1199 at 1220.305 kb on + strand, within EX28DRAFT_1199 at 1220.305 kb on + strand, within EX28DRAFT_1199 at 1220.402 kb on - strand, within EX28DRAFT_1199 at 1220.583 kb on + strand at 1220.584 kb on - strand at 1220.830 kb on - strand, within EX28DRAFT_1200 at 1220.830 kb on - strand, within EX28DRAFT_1200 at 1220.830 kb on - strand, within EX28DRAFT_1200 at 1220.979 kb on + strand, within EX28DRAFT_1200 at 1221.052 kb on + strand at 1221.061 kb on - strand at 1221.061 kb on - strand at 1221.085 kb on + strand at 1221.085 kb on + strand at 1221.086 kb on - strand at 1221.087 kb on + strand at 1221.095 kb on + strand at 1221.095 kb on + strand at 1221.095 kb on + strand at 1221.096 kb on - strand at 1221.124 kb on + strand at 1221.125 kb on - strand at 1221.125 kb on - strand at 1221.127 kb on + strand at 1221.127 kb on + strand at 1221.128 kb on - strand at 1221.128 kb on - strand at 1221.128 kb on - strand at 1221.132 kb on + strand at 1221.132 kb on + strand at 1221.132 kb on + strand at 1221.134 kb on + strand at 1221.175 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.177 kb on + strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.178 kb on - strand at 1221.384 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.492 kb on + strand, within EX28DRAFT_1201 at 1221.493 kb on - strand, within EX28DRAFT_1201 at 1221.734 kb on - strand, within EX28DRAFT_1201 at 1221.811 kb on + strand, within EX28DRAFT_1201 at 1221.869 kb on + strand at 1221.870 kb on - strand at 1221.997 kb on - strand at 1222.049 kb on + strand, within EX28DRAFT_1202 at 1222.049 kb on + strand, within EX28DRAFT_1202
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,219,645 - +0.2 1,219,645 - +0.7 1,219,757 + +1.1 1,220,019 - EX28DRAFT_1199 0.31 +0.4 1,220,019 - EX28DRAFT_1199 0.31 +1.0 1,220,151 - EX28DRAFT_1199 0.46 +0.5 1,220,305 + EX28DRAFT_1199 0.63 +0.0 1,220,305 + EX28DRAFT_1199 0.63 +1.1 1,220,402 - EX28DRAFT_1199 0.74 -0.2 1,220,583 + -1.1 1,220,584 - -0.7 1,220,830 - EX28DRAFT_1200 0.51 -1.1 1,220,830 - EX28DRAFT_1200 0.51 +1.0 1,220,830 - EX28DRAFT_1200 0.51 +1.0 1,220,979 + EX28DRAFT_1200 0.82 +0.6 1,221,052 + +0.4 1,221,061 - +0.7 1,221,061 - +0.5 1,221,085 + +0.8 1,221,085 + -1.1 1,221,086 - +0.4 1,221,087 + +1.1 1,221,095 + +1.5 1,221,095 + +0.2 1,221,095 + +0.3 1,221,096 - -2.3 1,221,124 + +1.8 1,221,125 - -0.2 1,221,125 - +2.5 1,221,127 + +0.6 1,221,127 + +0.1 1,221,128 - -0.6 1,221,128 - -0.5 1,221,128 - -0.2 1,221,132 + -0.3 1,221,132 + -1.5 1,221,132 + +0.1 1,221,134 + +0.1 1,221,175 + -3.1 1,221,177 + -0.5 1,221,177 + -1.8 1,221,177 + +0.2 1,221,177 + -0.2 1,221,177 + +0.9 1,221,177 + +0.3 1,221,177 + -1.0 1,221,178 - +1.3 1,221,178 - +0.4 1,221,178 - -0.2 1,221,178 - -2.5 1,221,178 - -4.6 1,221,384 + EX28DRAFT_1201 0.30 -0.5 1,221,492 + EX28DRAFT_1201 0.43 +0.5 1,221,492 + EX28DRAFT_1201 0.43 +0.2 1,221,492 + EX28DRAFT_1201 0.43 -0.5 1,221,493 - EX28DRAFT_1201 0.43 -0.7 1,221,734 - EX28DRAFT_1201 0.74 -0.2 1,221,811 + EX28DRAFT_1201 0.84 +1.3 1,221,869 + +1.5 1,221,870 - +0.5 1,221,997 - +0.2 1,222,049 + EX28DRAFT_1202 0.10 +0.7 1,222,049 + EX28DRAFT_1202 0.10 +0.7
Or see this region's nucleotide sequence