Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1118

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1116 and EX28DRAFT_1117 are separated by 15 nucleotidesEX28DRAFT_1117 and EX28DRAFT_1118 are separated by 12 nucleotidesEX28DRAFT_1118 and EX28DRAFT_1119 are separated by 266 nucleotides EX28DRAFT_1116: EX28DRAFT_1116 - ABC-type dipeptide transport system, periplasmic component, at 1,128,378 to 1,129,910 _1116 EX28DRAFT_1117: EX28DRAFT_1117 - D-alanyl-D-alanine dipeptidase, at 1,129,926 to 1,130,501 _1117 EX28DRAFT_1118: EX28DRAFT_1118 - transcriptional regulator, RpiR family, at 1,130,514 to 1,131,368 _1118 EX28DRAFT_1119: EX28DRAFT_1119 - Lysophospholipase, at 1,131,635 to 1,133,116 _1119 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -3 -2 -1 0 1at 1129.638 kb on - strand, within EX28DRAFT_1116at 1129.718 kb on - strand, within EX28DRAFT_1116at 1129.745 kb on - strand, within EX28DRAFT_1116at 1129.766 kb on + strandat 1129.928 kb on - strandat 1130.027 kb on + strand, within EX28DRAFT_1117at 1130.166 kb on - strand, within EX28DRAFT_1117at 1130.166 kb on - strand, within EX28DRAFT_1117at 1130.239 kb on + strand, within EX28DRAFT_1117at 1130.239 kb on + strand, within EX28DRAFT_1117at 1130.398 kb on + strand, within EX28DRAFT_1117at 1130.435 kb on - strand, within EX28DRAFT_1117at 1130.447 kb on + strandat 1130.448 kb on - strandat 1130.545 kb on - strandat 1130.682 kb on + strand, within EX28DRAFT_1118at 1130.682 kb on + strand, within EX28DRAFT_1118at 1130.682 kb on + strand, within EX28DRAFT_1118at 1130.792 kb on - strand, within EX28DRAFT_1118at 1130.819 kb on - strand, within EX28DRAFT_1118at 1130.879 kb on - strand, within EX28DRAFT_1118at 1131.209 kb on + strand, within EX28DRAFT_1118at 1131.470 kb on + strandat 1131.470 kb on + strandat 1131.522 kb on + strandat 1131.522 kb on + strandat 1131.523 kb on - strandat 1131.602 kb on + strandat 1131.602 kb on + strandat 1131.602 kb on + strandat 1131.603 kb on - strandat 1131.603 kb on - strandat 1131.603 kb on - strandat 1131.603 kb on - strandat 1131.608 kb on + strandat 1131.609 kb on - strandat 1131.712 kb on - strandat 1131.740 kb on + strandat 1131.740 kb on + strandat 1131.740 kb on + strandat 1131.839 kb on - strand, within EX28DRAFT_1119at 1131.910 kb on + strand, within EX28DRAFT_1119at 1131.927 kb on - strand, within EX28DRAFT_1119at 1131.961 kb on + strand, within EX28DRAFT_1119at 1131.988 kb on - strand, within EX28DRAFT_1119at 1131.988 kb on - strand, within EX28DRAFT_1119at 1132.079 kb on + strand, within EX28DRAFT_1119at 1132.080 kb on - strand, within EX28DRAFT_1119at 1132.080 kb on - strand, within EX28DRAFT_1119at 1132.277 kb on + strand, within EX28DRAFT_1119at 1132.277 kb on + strand, within EX28DRAFT_1119at 1132.277 kb on + strand, within EX28DRAFT_1119at 1132.278 kb on - strand, within EX28DRAFT_1119at 1132.278 kb on - strand, within EX28DRAFT_1119at 1132.330 kb on - strand, within EX28DRAFT_1119at 1132.330 kb on - strand, within EX28DRAFT_1119at 1132.330 kb on - strand, within EX28DRAFT_1119

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,129,638 - EX28DRAFT_1116 0.82 +0.4
1,129,718 - EX28DRAFT_1116 0.87 -0.7
1,129,745 - EX28DRAFT_1116 0.89 +0.6
1,129,766 + -1.0
1,129,928 - +1.5
1,130,027 + EX28DRAFT_1117 0.18 +0.2
1,130,166 - EX28DRAFT_1117 0.42 -0.3
1,130,166 - EX28DRAFT_1117 0.42 -1.3
1,130,239 + EX28DRAFT_1117 0.54 +0.2
1,130,239 + EX28DRAFT_1117 0.54 +0.6
1,130,398 + EX28DRAFT_1117 0.82 -0.5
1,130,435 - EX28DRAFT_1117 0.88 -1.3
1,130,447 + +0.2
1,130,448 - +0.7
1,130,545 - -0.3
1,130,682 + EX28DRAFT_1118 0.20 +0.9
1,130,682 + EX28DRAFT_1118 0.20 +0.5
1,130,682 + EX28DRAFT_1118 0.20 +0.0
1,130,792 - EX28DRAFT_1118 0.33 +0.6
1,130,819 - EX28DRAFT_1118 0.36 +0.1
1,130,879 - EX28DRAFT_1118 0.43 -0.0
1,131,209 + EX28DRAFT_1118 0.81 +0.7
1,131,470 + -0.6
1,131,470 + -0.7
1,131,522 + +0.6
1,131,522 + -0.2
1,131,523 - +0.0
1,131,602 + -3.0
1,131,602 + +0.1
1,131,602 + -0.1
1,131,603 - +0.3
1,131,603 - -0.4
1,131,603 - -0.9
1,131,603 - -0.8
1,131,608 + -0.1
1,131,609 - -1.8
1,131,712 - -2.2
1,131,740 + -0.2
1,131,740 + -1.0
1,131,740 + -1.2
1,131,839 - EX28DRAFT_1119 0.14 -1.0
1,131,910 + EX28DRAFT_1119 0.19 +0.2
1,131,927 - EX28DRAFT_1119 0.20 +1.1
1,131,961 + EX28DRAFT_1119 0.22 -0.9
1,131,988 - EX28DRAFT_1119 0.24 +0.3
1,131,988 - EX28DRAFT_1119 0.24 +0.3
1,132,079 + EX28DRAFT_1119 0.30 +0.0
1,132,080 - EX28DRAFT_1119 0.30 +1.1
1,132,080 - EX28DRAFT_1119 0.30 -0.5
1,132,277 + EX28DRAFT_1119 0.43 -0.4
1,132,277 + EX28DRAFT_1119 0.43 +0.2
1,132,277 + EX28DRAFT_1119 0.43 -1.1
1,132,278 - EX28DRAFT_1119 0.43 +0.2
1,132,278 - EX28DRAFT_1119 0.43 -0.5
1,132,330 - EX28DRAFT_1119 0.47 -0.6
1,132,330 - EX28DRAFT_1119 0.47 +0.5
1,132,330 - EX28DRAFT_1119 0.47 +0.1

Or see this region's nucleotide sequence