Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1116 and EX28DRAFT_1117 are separated by 15 nucleotides EX28DRAFT_1117 and EX28DRAFT_1118 are separated by 12 nucleotides EX28DRAFT_1118 and EX28DRAFT_1119 are separated by 266 nucleotides
EX28DRAFT_1116: EX28DRAFT_1116 - ABC-type dipeptide transport system, periplasmic component, at 1,128,378 to 1,129,910
_1116
EX28DRAFT_1117: EX28DRAFT_1117 - D-alanyl-D-alanine dipeptidase, at 1,129,926 to 1,130,501
_1117
EX28DRAFT_1118: EX28DRAFT_1118 - transcriptional regulator, RpiR family, at 1,130,514 to 1,131,368
_1118
EX28DRAFT_1119: EX28DRAFT_1119 - Lysophospholipase, at 1,131,635 to 1,133,116
_1119
Position (kb)
1130
1131
1132 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1129.638 kb on - strand, within EX28DRAFT_1116 at 1129.718 kb on - strand, within EX28DRAFT_1116 at 1129.745 kb on - strand, within EX28DRAFT_1116 at 1129.766 kb on + strand at 1129.928 kb on - strand at 1130.027 kb on + strand, within EX28DRAFT_1117 at 1130.166 kb on - strand, within EX28DRAFT_1117 at 1130.166 kb on - strand, within EX28DRAFT_1117 at 1130.239 kb on + strand, within EX28DRAFT_1117 at 1130.239 kb on + strand, within EX28DRAFT_1117 at 1130.398 kb on + strand, within EX28DRAFT_1117 at 1130.435 kb on - strand, within EX28DRAFT_1117 at 1130.447 kb on + strand at 1130.448 kb on - strand at 1130.545 kb on - strand at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.682 kb on + strand, within EX28DRAFT_1118 at 1130.792 kb on - strand, within EX28DRAFT_1118 at 1130.819 kb on - strand, within EX28DRAFT_1118 at 1130.879 kb on - strand, within EX28DRAFT_1118 at 1131.209 kb on + strand, within EX28DRAFT_1118 at 1131.470 kb on + strand at 1131.470 kb on + strand at 1131.522 kb on + strand at 1131.522 kb on + strand at 1131.523 kb on - strand at 1131.602 kb on + strand at 1131.602 kb on + strand at 1131.602 kb on + strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.603 kb on - strand at 1131.608 kb on + strand at 1131.609 kb on - strand at 1131.712 kb on - strand at 1131.740 kb on + strand at 1131.740 kb on + strand at 1131.740 kb on + strand at 1131.839 kb on - strand, within EX28DRAFT_1119 at 1131.910 kb on + strand, within EX28DRAFT_1119 at 1131.927 kb on - strand, within EX28DRAFT_1119 at 1131.961 kb on + strand, within EX28DRAFT_1119 at 1131.988 kb on - strand, within EX28DRAFT_1119 at 1131.988 kb on - strand, within EX28DRAFT_1119 at 1132.079 kb on + strand, within EX28DRAFT_1119 at 1132.080 kb on - strand, within EX28DRAFT_1119 at 1132.080 kb on - strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.277 kb on + strand, within EX28DRAFT_1119 at 1132.278 kb on - strand, within EX28DRAFT_1119 at 1132.278 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119 at 1132.330 kb on - strand, within EX28DRAFT_1119
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,129,638 - EX28DRAFT_1116 0.82 +0.4 1,129,718 - EX28DRAFT_1116 0.87 -0.7 1,129,745 - EX28DRAFT_1116 0.89 +0.6 1,129,766 + -1.0 1,129,928 - +1.5 1,130,027 + EX28DRAFT_1117 0.18 +0.2 1,130,166 - EX28DRAFT_1117 0.42 -0.3 1,130,166 - EX28DRAFT_1117 0.42 -1.3 1,130,239 + EX28DRAFT_1117 0.54 +0.2 1,130,239 + EX28DRAFT_1117 0.54 +0.6 1,130,398 + EX28DRAFT_1117 0.82 -0.5 1,130,435 - EX28DRAFT_1117 0.88 -1.3 1,130,447 + +0.2 1,130,448 - +0.7 1,130,545 - -0.3 1,130,682 + EX28DRAFT_1118 0.20 +0.9 1,130,682 + EX28DRAFT_1118 0.20 +0.5 1,130,682 + EX28DRAFT_1118 0.20 +0.0 1,130,792 - EX28DRAFT_1118 0.33 +0.6 1,130,819 - EX28DRAFT_1118 0.36 +0.1 1,130,879 - EX28DRAFT_1118 0.43 -0.0 1,131,209 + EX28DRAFT_1118 0.81 +0.7 1,131,470 + -0.6 1,131,470 + -0.7 1,131,522 + +0.6 1,131,522 + -0.2 1,131,523 - +0.0 1,131,602 + -3.0 1,131,602 + +0.1 1,131,602 + -0.1 1,131,603 - +0.3 1,131,603 - -0.4 1,131,603 - -0.9 1,131,603 - -0.8 1,131,608 + -0.1 1,131,609 - -1.8 1,131,712 - -2.2 1,131,740 + -0.2 1,131,740 + -1.0 1,131,740 + -1.2 1,131,839 - EX28DRAFT_1119 0.14 -1.0 1,131,910 + EX28DRAFT_1119 0.19 +0.2 1,131,927 - EX28DRAFT_1119 0.20 +1.1 1,131,961 + EX28DRAFT_1119 0.22 -0.9 1,131,988 - EX28DRAFT_1119 0.24 +0.3 1,131,988 - EX28DRAFT_1119 0.24 +0.3 1,132,079 + EX28DRAFT_1119 0.30 +0.0 1,132,080 - EX28DRAFT_1119 0.30 +1.1 1,132,080 - EX28DRAFT_1119 0.30 -0.5 1,132,277 + EX28DRAFT_1119 0.43 -0.4 1,132,277 + EX28DRAFT_1119 0.43 +0.2 1,132,277 + EX28DRAFT_1119 0.43 -1.1 1,132,278 - EX28DRAFT_1119 0.43 +0.2 1,132,278 - EX28DRAFT_1119 0.43 -0.5 1,132,330 - EX28DRAFT_1119 0.47 -0.6 1,132,330 - EX28DRAFT_1119 0.47 +0.5 1,132,330 - EX28DRAFT_1119 0.47 +0.1
Or see this region's nucleotide sequence